Xanthomonas campestris pv. vesicatoria: XCV2974
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Entry
XCV2974 CDS
T00288
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcv
Xanthomonas campestris pv. vesicatoria
Pathway
xcv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XCV2974 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcv03019
]
XCV2974 (deaD)
03009 Ribosome biogenesis [BR:
xcv03009
]
XCV2974 (deaD)
Enzymes [BR:
xcv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XCV2974 (deaD)
Messenger RNA biogenesis [BR:
xcv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XCV2974 (deaD)
Ribosome biogenesis [BR:
xcv03009
]
Prokaryotic type
rRNA helicases
XCV2974 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAJ24661
UniProt:
Q3BRA8
LinkDB
All DBs
Position
complement(3383466..3385412)
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AA seq
648 aa
AA seq
DB search
MLLCACRLRAAPPELPMTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALL
AGRDVLGQAQTGTGKTAAFALPVLSNADLHQVKPQALVLAPTRELAIQVAEAFQKYAEAI
PGFRVLPVYGGQPYAQQLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEM
LRMGFIDDVEAVLKKLPAQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIR
QRYWWVSGLHKLDALTRILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQ
AAREKTIAQLKDGKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGR
NGDAILFVTPREKGMLRSIERATRQPIEEMQLPSVDAVNDTRVARFMSRITETLAGGQID
MYRDLLQRYEAENNVPAIDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGD
RPRFEPKFERGPRADGERAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVK
PANIVGAIANEAGLESRYIGRIDIQDDYSILDLPADMPRELLQHLKKVWVSGQQLNMRKL
EDGEAAAAASKPRFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgctgctttgcgcctgccggctccgtgcggcgcctccggagttacccatgacccaagaa
tcttccgcgccgctgctgtttgcagatctcggcctctcggacgctgtgatgaaggccgtt
gccaatgtcggctacgagtcgccgtcgccgatccaggctgccaccatccccgcgttgctg
gccggtcgcgacgtactcggccaggcccagaccggtaccggcaagaccgccgcgttcgcg
ctgccggtgctgtccaacgccgatctccaccaggtcaagccgcaggcattggtgctggcc
ccgacccgcgaactggccatccaggtcgccgaggcgttccagaaatatgccgaagccatt
cccggcttccgcgtgctgccggtctacggcggccagccgtatgcccagcagctgagcgcg
ctcaagcgcggcgtgcacgtggtggtcggtaccccgggccgggtgatcgatcacctggac
cgcggtaccctggatctgtcgcagctcaagacgctggtgctggacgaagccgacgaaatg
ctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagttgccggcgcagcgc
caggtggccttgttctcggccaccatgccgccggccatccgccgtatcgcgcagacctat
ctgaaggacccggccgaagtcaccatcgcggccaagaccaccacctcggccaacatccgc
cagcgctactggtgggtgagcgggctgcacaagctggacgcgttgacccgcattctcgag
gtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggccaccgaagagctg
gcgcagaagctgcaggcgcgcggcatggcggcagcggccatcaacggcgacatgcagcag
gccgcacgcgagaagaccatcgcccagctcaaggacggcaagctggacatcctggtggcc
accgacgtggccgcacgcggtctggacgtggagcgcatcagccacgtgctgaactacgac
attccctacgacaccgaaagctacgtgcaccgcatcggtcgcaccggccgtgccgggcgt
aacggcgacgcgatcctgttcgtgacgccgcgcgagaagggcatgctgcgctccatcgaa
cgcgccacccgtcagccgatcgaagagatgcagctgccgagcgtggacgcggtcaacgac
acccgcgtcgcgcgtttcatgagccgcatcaccgagaccctggccggtggccagatcgac
atgtaccgcgacctgctgcagcgctacgaagccgaaaacaacgtgccggcgatcgatatc
gccgccgcgctggccaagctgctgcagggcgatgccccgttcctgctgaccccgccggtg
cgcggtgcgcgcgaggacactgcgccgcgcgaacgtcatgagcgtgccgaccgcggcgat
cgcccccgcttcgagccgaagttcgaacgtggcccgcgtgccgacggcgagcgcgctgca
cgcccgccgcgcggtgacgatgccggcgagcgtccacgccgcgagccggccccacgtggc
gagccggagttcggcatggagagctaccgcatcgaagtgggccacagccacggcgtgaag
ccggccaacatcgttggcgcgatcgccaacgaagccgggctggaaagccggtatatcggt
cgtatcgatatccaggacgattattcgatcctggatctgccggccgacatgccgcgcgaa
ctgctgcagcacctcaagaaggtctgggtgtctggccagcagctcaacatgcgcaagctg
gaagacggcgaagcggccgcagcggcgtccaagccgcgcttcccgcgtggcggcaagccg
tccggtcgcccgaacggcccgggtcgtccgatggaccgcgccggcgcgccgcaccgcaag
ggtccgccgaagccgcgcggcgagtaa
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integrated database retrieval system
