Xanthomonas cucurbitae: EBN15_12060
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Entry
EBN15_12060 CDS
T06553
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xcz
Xanthomonas cucurbitae
Pathway
xcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBN15_12060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xcz03019
]
EBN15_12060
03009 Ribosome biogenesis [BR:
xcz03009
]
EBN15_12060
Enzymes [BR:
xcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EBN15_12060
Messenger RNA biogenesis [BR:
xcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EBN15_12060
Ribosome biogenesis [BR:
xcz03009
]
Prokaryotic type
rRNA helicases
EBN15_12060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
QHG87569
UniProt:
A0A2S7DPV7
LinkDB
All DBs
Position
complement(2796733..2798634)
Genome browser
AA seq
633 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVAAVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLSQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMSRISETLAGGQIELYRDLLQRFEGENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGAREDAAPRERHERADRGERPRFEPKFERGPRAND
GERAPRPPRGEEAGERVRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLE
SRYIGRIDIQDDYSVLDLPADMPRELLQHLKKVWVSGQQLNMRRLEDGEAATSPSKPRFP
RGGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaggcggttgccgccgtcggctacgagtccccttcgccgatccaggccgccaccatc
cccgcgctgctggccggccgcgacgtgctcggccaggcgcagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaatgccgacctgagccaggtcaagccgcaggcc
ctggtgctggctcccacccgcgagctggctatccaggtcgccgaggcgtttcagaaatat
gccgaagccattcccggtttccgcgtactgccggtgtacggcggccagccgtacgcccag
cagctcagtgcgctcaagcgcggcgtgcatgtggtggtgggcaccccggggcgggtgatc
gatcacctggaccgcggcaccctggacctgtcgcagctgaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgatgtcgaagccgtgctcaagaagctg
cccgagcagcgccaggtggcgctgttctcggccaccatgccgccggccatccgccggatc
gcgcagacctatctgaaagacccggccgaagtcaccatcgcggccaagaccactacctcg
gccaatatccgccagcgttactggtgggtgagcgggctgcacaagctggacgcgctgacc
cgcatcctggaagtggagccgttcgacggcatgattattttcgcgcgcaccaaggccggc
accgaagagctggcgcagaagctgcaggcacgcggcctggctgcggccgccatcaacggc
gacatgcagcaggcggcgcgtgagaagaccatcgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcgcgtggcctggacgtggagcgcatcagccatgtg
ctgaactacgacattccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggc
cgtgccgggcgcagcggcgaggcgatcctgttcgtcaccccgcgcgaaaagggcatgctg
cgttcgatcgagcgcgccacccgccagccgatcgaagaaatgcagctgcccagcgtggat
gcggtcaacgacacccgcgtggcgcgcttcatgagccgcatcagcgagactctggccggt
ggccagatcgagctgtatcgcgatctgctgcagcgctttgaaggtgaaaacaacgtaccg
gcgatcgacatcgctgccgcgctggccaagttgctgcagggcgatgcgccattcctgctg
actccgccggtacgtggcgcacgcgaggacgccgcaccgcgcgagcgccatgaacgtgcg
gatcgtggcgagcgcccgcgcttcgagccgaagttcgagcgtggcccgcgtgccaacgat
ggcgagcgcgctccgcgtccgccgcgcggcgaagaggccggcgagcgtgtgcgccgcgaa
ccggcgccgcgtggcgaaccggaattcggcatggagagctaccgcatcgaagtgggccac
agccacggcgtgaagccggccaatatcgttggcgcaatcgccaacgaggccggcctggaa
agccgttacatcggccgtatcgacattcaggacgattactccgtcctggacctgccggcc
gacatgccgcgcgaactgctgcagcacctgaagaaggtctgggtgtccggccagcagctc
aacatgcgcaggctggaagacggcgaggcggccacgtcgccgtccaagccgcgtttcccg
cgcggtggcaagccatccggccgtccgaatggcccggggcgtccgatggaccgcgccggc
gcgccgcaccgcaagggtccgcccaagccgcgcggagactga
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