KEGG   Xanthobacter dioxanivorans: EZH22_17665
Entry
EZH22_17665       CDS       T07733                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xdi  Xanthobacter dioxanivorans
Pathway
xdi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xdi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EZH22_17665 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xdi03400]
    EZH22_17665 (ligD)
Enzymes [BR:xdi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EZH22_17665 (ligD)
DNA repair and recombination proteins [BR:xdi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EZH22_17665 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QRG04954
UniProt: A0A974PKP2
LinkDB
Position
complement(3799306..3801915)
AA seq 869 aa
MADLDLYRAKRDFAATPEPEGKAKGGAGRRKGRQPAPEGLFVVQKHAARRLHYDFRLEMG
GVLKSWAVTRGPSLVPGEKRLAVHVEDHPLAYAGFEGTIPKGEYGGGSVIVWDRGTWTPV
GDPHAAYAKGHMEFTLDGEKLHGRWHLVRMAPRGRGTADGKKDNWLLIKADDDAARPEGA
PDVLDELPLSVLSGRDIADLSSDPPPEGKSTPRARSKPKVKAAPAGAAPAQAKAAPPPQP
DPPVWPKGAKAAPLPDFVPPALATLATRPPAGQRYVHEIKFDGYRIEARIAGGRVRLLTR
TGLDWTHRFGPEVLAVLAALPVREALIDGEMVVESGNGASDFSALQADLSDGRTDRFLYC
AFDLLHLDGMDLTGAALVERKAALERLIPPGEGKVRFSIHFEDDGSLVLQHACRLSLEGV
VSKLKNAPYRSGRSRDWIKSKCSDRQEFVIGGFVPSTTTRDAIGSLVLGAFEDGKLRHVG
RVGTGFTARVAADLHALLAPDAVAASPFSGRLPAEAARGVTFVKPVHVAEVEFRSWTGDG
HLRHAAFRGLRDDKPAAEVEREAPPPAAAKNTKDKTAEEEANPPRRRVRLTHPDRIYWPD
VGLTKEGLADYYAEVWRHMAPFVAGRPLALVRCPEGIDGPRFFQKHPWKGLDRTILLVPD
PQEPKAPPYVAVRDLDGLTALVQGAVLEIHPFGSTIADWERPDTLIMDLDPGDGVGWPAV
LAAAAEVRARLEKAGLAAFVKTSGGKGLHVCAPLTPKADWAAAKAFTKAMAEAMATDSPT
LYVATIAKARRTGRILVDYLRNQRGQTAVAPYSTRARPGAPVSMPLAWEELSTDIGPAHF
TALNALTRLENLSADPWADFRRAAVPLPG
NT seq 2610 nt   +upstreamnt  +downstreamnt
atggccgacctcgatctctaccgtgccaagcgcgatttcgccgccacgcccgagcccgag
ggcaaggcgaagggcggcgccggtcgccgcaagggccgccagccggcccccgaaggcctc
ttcgtggtgcagaagcacgcggcgcgccggctgcattacgacttccgcctggagatgggc
ggggtgctgaagagctgggcggtgacgcgcggcccgagcctcgtgcccggcgagaagcgc
ctcgccgtgcatgtggaggaccatcccctcgcctatgccggcttcgagggcaccatcccc
aagggcgagtatggcggcggcagcgtcatcgtctgggatcgcggcacctggaccccggtg
ggcgacccgcacgccgcctatgccaagggccatatggaattcaccctggacggggaaaag
ctccacggccgctggcacctggtgcgcatggcgccgcgcggccggggaacggcggacggg
aagaaggacaactggctgctgatcaaggccgatgacgatgccgcccggccggagggggcg
ccggatgttctcgacgagctgcccctctcggtgctgagcgggcgcgacatcgccgatctt
tccagcgacccgccgcccgagggcaagagcacgccgagggcgagaagcaagccgaaggtg
aaggcggctcccgcaggcgcggcgccggcgcaagcgaaagcggctccgccgccgcagccc
gatccccctgtttggcccaagggtgccaaagcggcgccgctgccggacttcgtgcctccg
gcgctggccaccctcgccacccgcccgccggcggggcagcgctacgtgcacgagatcaag
ttcgacggctaccgcatcgaggcgcgcatcgccggcgggcgggtgcggcttctcacccgc
accgggctcgactggacccacaggttcggccccgaggtcctggcggtgctggcggccttg
ccggtgcgcgaggccctgatcgacggcgagatggtggtggaaagcggcaacggcgcctcc
gacttctcggccctgcaggcggacctgagcgacggccgcaccgaccgcttcctctattgc
gccttcgacctcctgcatcttgacggcatggacctgaccggcgccgccctcgtcgagcgc
aaggcggccctggagcggctgatcccgcccggcgagggcaaggtgcggttctccatccat
ttcgaggacgacggctccctcgtgctccagcacgcctgccggctcagcctggagggcgtc
gtctccaagctgaagaatgccccctaccgctccggccgctcgcgcgactggatcaagtcc
aagtgctcggaccggcaggagttcgtcatcggcggcttcgtgccctccaccaccacccgc
gacgccatcggctcgctggtgctgggggcgttcgaggacggcaagctgcgccacgtgggg
cgcgtgggcaccggcttcaccgcccgcgtggccgccgacctgcatgcgctgctggcgccg
gacgcggtcgccgcatcgcccttttccggcaggctcccggcggaggcggcgcggggcgtc
accttcgtgaagccggtccatgtggcggaggtggaattccgcagctggacgggggacggc
catttgcgccacgccgccttccgcggcctgcgcgacgacaagcccgccgccgaggtggag
cgcgaggcgccgccgcccgccgccgcgaaaaatacgaaagacaagacggcagaagaggaa
gcaaatccgccccggcgccgcgtgcgcctcacccatcccgaccgcatctactggccggat
gtgggactgaccaaggaaggcctcgccgattactatgccgaggtctggcgccacatggcc
cccttcgtcgctggccggccgctggccctggtgcgctgcccggaggggatcgacggcccc
cgcttcttccagaagcacccatggaaggggctcgaccgcaccatcctgctggtgcccgat
ccgcaggagccgaaggcgccgccctatgtggccgtccgcgacctcgacgggctcaccgct
ttggtgcagggggcggtgctggagatccaccccttcggctccaccatcgccgactgggag
cgacccgacaccttgatcatggacctcgaccccggcgacggggtcggctggcccgccgtg
ctcgcggcggcggcggaggtgcgggcgcggctggagaaagccgggctcgccgccttcgtg
aaaacctccggcggcaagggtttgcacgtctgcgccccgctgacgccgaaggccgactgg
gcggcggcgaaggccttcaccaaggccatggcggaggcgatggccaccgacagcccgacc
ctctatgtcgccaccatcgccaaggccaggcgcacggggcgcatcctcgtcgactacctg
cgcaaccagcgcggccagacggcggtggcgccctattccacccgcgcccggcccggcgcc
cctgtctccatgccgctggcctgggaggagctgtccaccgacatcggcccggcccacttt
accgcgctcaacgccctgacgcggcttgaaaatctttccgccgacccgtgggcggacttc
cgccgggcggcggttcccctgcccggctga

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