Xanthobacter dioxanivorans: EZH22_17665
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Entry
EZH22_17665 CDS
T07733
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xdi
Xanthobacter dioxanivorans
Pathway
xdi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EZH22_17665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xdi03400
]
EZH22_17665 (ligD)
Enzymes [BR:
xdi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EZH22_17665 (ligD)
DNA repair and recombination proteins [BR:
xdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EZH22_17665 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QRG04954
UniProt:
A0A974PKP2
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All DBs
Position
complement(3799306..3801915)
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AA seq
869 aa
AA seq
DB search
MADLDLYRAKRDFAATPEPEGKAKGGAGRRKGRQPAPEGLFVVQKHAARRLHYDFRLEMG
GVLKSWAVTRGPSLVPGEKRLAVHVEDHPLAYAGFEGTIPKGEYGGGSVIVWDRGTWTPV
GDPHAAYAKGHMEFTLDGEKLHGRWHLVRMAPRGRGTADGKKDNWLLIKADDDAARPEGA
PDVLDELPLSVLSGRDIADLSSDPPPEGKSTPRARSKPKVKAAPAGAAPAQAKAAPPPQP
DPPVWPKGAKAAPLPDFVPPALATLATRPPAGQRYVHEIKFDGYRIEARIAGGRVRLLTR
TGLDWTHRFGPEVLAVLAALPVREALIDGEMVVESGNGASDFSALQADLSDGRTDRFLYC
AFDLLHLDGMDLTGAALVERKAALERLIPPGEGKVRFSIHFEDDGSLVLQHACRLSLEGV
VSKLKNAPYRSGRSRDWIKSKCSDRQEFVIGGFVPSTTTRDAIGSLVLGAFEDGKLRHVG
RVGTGFTARVAADLHALLAPDAVAASPFSGRLPAEAARGVTFVKPVHVAEVEFRSWTGDG
HLRHAAFRGLRDDKPAAEVEREAPPPAAAKNTKDKTAEEEANPPRRRVRLTHPDRIYWPD
VGLTKEGLADYYAEVWRHMAPFVAGRPLALVRCPEGIDGPRFFQKHPWKGLDRTILLVPD
PQEPKAPPYVAVRDLDGLTALVQGAVLEIHPFGSTIADWERPDTLIMDLDPGDGVGWPAV
LAAAAEVRARLEKAGLAAFVKTSGGKGLHVCAPLTPKADWAAAKAFTKAMAEAMATDSPT
LYVATIAKARRTGRILVDYLRNQRGQTAVAPYSTRARPGAPVSMPLAWEELSTDIGPAHF
TALNALTRLENLSADPWADFRRAAVPLPG
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggccgacctcgatctctaccgtgccaagcgcgatttcgccgccacgcccgagcccgag
ggcaaggcgaagggcggcgccggtcgccgcaagggccgccagccggcccccgaaggcctc
ttcgtggtgcagaagcacgcggcgcgccggctgcattacgacttccgcctggagatgggc
ggggtgctgaagagctgggcggtgacgcgcggcccgagcctcgtgcccggcgagaagcgc
ctcgccgtgcatgtggaggaccatcccctcgcctatgccggcttcgagggcaccatcccc
aagggcgagtatggcggcggcagcgtcatcgtctgggatcgcggcacctggaccccggtg
ggcgacccgcacgccgcctatgccaagggccatatggaattcaccctggacggggaaaag
ctccacggccgctggcacctggtgcgcatggcgccgcgcggccggggaacggcggacggg
aagaaggacaactggctgctgatcaaggccgatgacgatgccgcccggccggagggggcg
ccggatgttctcgacgagctgcccctctcggtgctgagcgggcgcgacatcgccgatctt
tccagcgacccgccgcccgagggcaagagcacgccgagggcgagaagcaagccgaaggtg
aaggcggctcccgcaggcgcggcgccggcgcaagcgaaagcggctccgccgccgcagccc
gatccccctgtttggcccaagggtgccaaagcggcgccgctgccggacttcgtgcctccg
gcgctggccaccctcgccacccgcccgccggcggggcagcgctacgtgcacgagatcaag
ttcgacggctaccgcatcgaggcgcgcatcgccggcgggcgggtgcggcttctcacccgc
accgggctcgactggacccacaggttcggccccgaggtcctggcggtgctggcggccttg
ccggtgcgcgaggccctgatcgacggcgagatggtggtggaaagcggcaacggcgcctcc
gacttctcggccctgcaggcggacctgagcgacggccgcaccgaccgcttcctctattgc
gccttcgacctcctgcatcttgacggcatggacctgaccggcgccgccctcgtcgagcgc
aaggcggccctggagcggctgatcccgcccggcgagggcaaggtgcggttctccatccat
ttcgaggacgacggctccctcgtgctccagcacgcctgccggctcagcctggagggcgtc
gtctccaagctgaagaatgccccctaccgctccggccgctcgcgcgactggatcaagtcc
aagtgctcggaccggcaggagttcgtcatcggcggcttcgtgccctccaccaccacccgc
gacgccatcggctcgctggtgctgggggcgttcgaggacggcaagctgcgccacgtgggg
cgcgtgggcaccggcttcaccgcccgcgtggccgccgacctgcatgcgctgctggcgccg
gacgcggtcgccgcatcgcccttttccggcaggctcccggcggaggcggcgcggggcgtc
accttcgtgaagccggtccatgtggcggaggtggaattccgcagctggacgggggacggc
catttgcgccacgccgccttccgcggcctgcgcgacgacaagcccgccgccgaggtggag
cgcgaggcgccgccgcccgccgccgcgaaaaatacgaaagacaagacggcagaagaggaa
gcaaatccgccccggcgccgcgtgcgcctcacccatcccgaccgcatctactggccggat
gtgggactgaccaaggaaggcctcgccgattactatgccgaggtctggcgccacatggcc
cccttcgtcgctggccggccgctggccctggtgcgctgcccggaggggatcgacggcccc
cgcttcttccagaagcacccatggaaggggctcgaccgcaccatcctgctggtgcccgat
ccgcaggagccgaaggcgccgccctatgtggccgtccgcgacctcgacgggctcaccgct
ttggtgcagggggcggtgctggagatccaccccttcggctccaccatcgccgactgggag
cgacccgacaccttgatcatggacctcgaccccggcgacggggtcggctggcccgccgtg
ctcgcggcggcggcggaggtgcgggcgcggctggagaaagccgggctcgccgccttcgtg
aaaacctccggcggcaagggtttgcacgtctgcgccccgctgacgccgaaggccgactgg
gcggcggcgaaggccttcaccaaggccatggcggaggcgatggccaccgacagcccgacc
ctctatgtcgccaccatcgccaaggccaggcgcacggggcgcatcctcgtcgactacctg
cgcaaccagcgcggccagacggcggtggcgccctattccacccgcgcccggcccggcgcc
cctgtctccatgccgctggcctgggaggagctgtccaccgacatcggcccggcccacttt
accgcgctcaacgccctgacgcggcttgaaaatctttccgccgacccgtgggcggacttc
cgccgggcggcggttcccctgcccggctga
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