Xanthomonas dyei: NYR95_15205
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Entry
NYR95_15205 CDS
T09460
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xdy
Xanthomonas dyei
Pathway
xdy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xdy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NYR95_15205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xdy03019
]
NYR95_15205
03009 Ribosome biogenesis [BR:
xdy03009
]
NYR95_15205
Enzymes [BR:
xdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NYR95_15205
Messenger RNA biogenesis [BR:
xdy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NYR95_15205
Ribosome biogenesis [BR:
xdy03009
]
Prokaryotic type
rRNA helicases
NYR95_15205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
WOB52733
LinkDB
All DBs
Position
complement(3465471..3467390)
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AA seq
639 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLASGQIDMYRDLLQRYEAENNVP
AIEIAAAMAKLLQGDAPFLLTPPVRGAREEFTPQRTERADRGDRGDRGERPRFEPKFERG
PRANDGERAPRPPRADDAGSERPRRDPAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIA
NEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAASP
SKPRFPRGGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaagccgttgccaacgttggctacgagtcgccgtcgccgatccaggctgccaccatt
cccgcgctgcttgccggccgcgacgtcctcggccaggcgcagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctgaatcagctcaagccgcaggcg
ctggtgctggccccgacccgcgaactggccatccaggtcgccgaagccttccagaaatat
gccgaagccatccccggcttccgcgtgctgcccgtctacggcggccagccgtatgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtgggaaccccgggccgggtgatc
gatcacctggatcgcggcaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggctttatcgacgacgtcgaagccgtgctgaagaagctg
ccggaaaagcgccaggtggcgttgttctcggccaccatgcctccggccattcgccgcatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagaccaccacttcg
gccaacatccgccagcgctactggtgggtgagcgggctgcacaagctggacgcgctgacc
cgcatcctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccggt
accgaagaactggcgcagaagctgcaggcccgtggcctggccgcggccgccatcaacggc
gacatgcagcaggccgcgcgtgaaaagaccattgcccagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcccgcggcctggacgtggagcgcgtcagccacgtg
ctcaattacgacatcccgtacgacacggaaagctatgtgcaccgcatcggccgtaccggt
cgtgccggccgtaatggcgacgccattctgttcgtgaccccgcgcgagaagggcatgctg
cgctcgatcgagcgcgcgacccgtcagccgatcgaagaaatgcagctgccgagcgtggat
gccgtcaacgacacccgcgtggcgcgcttcatgacgcgcatcaccgagacgctggccagt
ggccagatcgacatgtaccgcgatctgctgcagcgctacgaggccgaaaacaacgtgccg
gcgatcgagatcgccgcggcgatggccaagttgctgcagggcgatgcgccgttcctgctg
accccgccggtgcgtggcgcgcgcgaagagttcaccccgcagcgcaccgagcgtgccgac
cgtggagatcgcggcgaccgtggcgagcgtccgcgtttcgaacccaagttcgagcgtggc
ccgcgtgccaacgatggcgagcgcgcaccgcgtccgccgcgtgccgacgatgccggtagc
gagcgtccgcgccgtgacccggccccgcgtggcgagccggagttcggcatggagagctat
cgcatcgaagtgggccacacccacggcgtgaagccggccaacatcgtcggcgccatcgcc
aacgaggccggtctggaaagccgctatatcggccggatcgatatccaggacgattattcg
atcctggatctgccggccgatatgccgcgcgagctgctgacgcacctgaagaaggtctgg
gtctccggccagcagctcaacatgcgcaagctggaagaaggcgaggcggcggcgtcgccg
tccaagccgcgcttcccgcgtggtggcaagccgtccggtcgtccgaacggcccggggcgt
ccgatggatcgcgccggcgcgccgcaccgcaagggcccgcccaagccgcgcggcgagtaa
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