Xenia sp. Carnegie-2017 (soft corals): 124452414
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Entry
124452414 CDS
T08024
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
xen
Xenia sp. Carnegie-2017 (soft corals)
Pathway
xen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
124452414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xen03400
]
124452414
Enzymes [BR:
xen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124452414
DNA repair and recombination proteins [BR:
xen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
124452414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
BRCT
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
HAUS2
Motif
Other DBs
NCBI-GeneID:
124452414
NCBI-ProteinID:
XP_046858901
LinkDB
All DBs
Position
Unknown
AA seq
943 aa
AA seq
DB search
MASKLEVALQVPFRDICMLLEKIHEIKGTDKKKNMLNSFIASWRDTHHKIHGNTQTEDSF
FPAMRLLLPQFDKERPAYGLKEVALAKHYIEILSIGKESMDAKKLLNYKAPNHASKNAGD
FATVAYFVLVNRCPEKGSLNIKQVNDLLTKLAMGNSERKKSEMRNALQSLLRNTSALEQK
WLIRIILKELKGGISDKSVFDVFHPDAMELYNVCSSLSKVCEDLRDPTVRTSDTDIKLFS
AFKPMLGQRAAIDEVEKLMNVDEFYIETKLDGERFMLHREENTFKYFSRGSNDYTATFGA
SPKEGYLTPFIADCFPSKVKSCILDGEMMAFDASNKAKFLSKGENIDFKSAKTYSSNAGL
HPCFVVFDVIFVNGKSIASLPLKERLQNLEKIFTAVPGRIERVQREQASKRQDVIVALNN
AVDKYEEGLLIKSPSSIYQPNIRNGSGWLKIKPEYVNGLADELDVIIIGGYFGSGSRGGM
ISHFLCGVSCPSSIHDEEAAKFYSFCKVGSGYTNKELKDLSHHLDPYWRKFDAKKPPTMI
EFTNGFKEKPDVWIEPRNSKIVQVKAAEIVPSDNYKTGQTLRFPRVEKIRDDKTWNECLD
INELERIRTIAKGKLTYQHATTSDEHVTKKNKRIVTRIESPLKVAKHFAAANTSNVEEKS
RIFEGKEFYIVNGPPDCGKVELEGKILEVNETFFLSLFDECSTCLCLSTKNGGKVVQNPG
KDTHCVIAHKSNVRVTNIIKQTIYDIVNASWLLESLERKQMVPWLPCHMIHMSSKTIEKF
SLEYDENGDSFTKDLNVETLKEIFKKLDERQNVVKLTRNDIIEVEERYITNSTLGLFRSY
RFYVDRYSTIGDPHTRLPSSSLHVQTYVLRYYGGHISDTFDEEVSHVITSPRDFSRVPVI
QQIMHRRTRFAHIVTETWITECVQVGAILKEQDYRPIIDDVLE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaaattagaagtggcgcttcaagttccttttcgcgatatttgtatgctccta
gagaagattcacgaaatcaaaggaacagacaagaaaaagaatatgctgaactcttttata
gcctcttggcgtgatactcaccataaaatacacggaaatactcaaacagaggattcattt
tttcctgcaatgagattactcttgcctcaatttgacaaagaacggcccgcgtatggcttg
aaggaggttgcattagcaaagcactacatcgaaatcctgagcattgggaaagaaagcatg
gacgctaaaaagctactcaattacaaggcacctaaccatgccagcaagaatgctggcgac
ttcgcaactgtcgcttattttgtcttagtgaacagatgtccggagaaaggaagtctaaat
atcaagcaagtcaacgatctactaactaaattggcaatgggaaatagtgagcgtaaaaaa
tccgaaatgagaaatgccttgcagagtcttttgagaaatactagtgctcttgaacagaaa
tggttgattcggatcattttgaaggaactaaaaggaggcatcagcgacaaaagtgtattc
gatgtttttcacccagatgcaatggaattgtataacgtttgtagctcattgtcgaaggtg
tgtgaagatttgcgagaccccacggtgagaacaagcgatacggatataaaattgttttca
gcattcaaaccgatgttaggacagcgtgcggccattgacgaggtggaaaaattgatgaat
gtagatgagttttacattgaaacgaaacttgacggtgaaagattcatgcttcatcgtgaa
gagaacacgttcaagtatttctcccgaggatctaatgattatactgcaacctttggagct
tcaccgaaggaaggataccttacccccttcattgcggactgttttcccagtaaagtaaaa
tcttgcatccttgacggagagatgatggctttcgatgcgtcgaacaaagcaaaattccta
tcaaaaggagagaacattgattttaaaagtgctaagacgtattcatcgaatgcaggtctt
catccatgtttcgtcgttttcgatgttatatttgtgaatggtaaaagtatagctagtctt
cctctcaaagaacgactacaaaacctagagaagatattcacagcagttcctggtagaata
gaacgcgtccagcgtgagcaagcgtcgaagagacaagatgttattgtagcattaaacaat
gctgttgacaagtacgaagaaggtttgctaatcaagtcaccatcatcgatatatcaacca
aatattagaaacggaagtggatggttgaaaattaaacccgaatatgttaacggtttggca
gatgagttggatgttattataattggaggatactttggtagcgggtcacgtggcggaatg
atttctcattttttatgtggtgtatcttgtccttcatcgatacacgacgaagaagcagca
aagttttactcattttgtaaagttggttcgggatatacaaataaagaactgaaagatctg
tctcatcatttagatccttactggagaaaatttgatgcaaagaaacctcccacgatgata
gagttcacaaacggtttcaaggagaaacctgatgtttggatagaaccgcggaattctaaa
atagttcaagttaaagccgcagaaattgttccctctgacaattacaaaacaggtcaaacg
ttacgttttcctcgcgttgagaaaatccgcgatgacaaaacctggaatgagtgtctggac
attaacgaacttgagagaatacgaacgattgcaaaaggcaaactgacgtatcaacacgcc
acgaccagtgacgaacatgtcacgaagaagaataagagaatagtgacacgaatcgagagc
ccgctaaaagttgccaaacattttgcagctgccaacacgagtaatgtagaagagaaatct
cggatatttgaaggcaaggaattttacattgtgaatggtccaccagattgtggcaaagta
gaactggagggaaagattttagaggtaaatgaaacgttcttcctctccctcttcgatgaa
tgctcaacgtgtttatgtttatcaactaagaatggtggaaaggttgttcaaaatcctggc
aaagacacgcattgcgtcatcgctcacaagagcaacgtcagagtgactaacataattaaa
caaacgatatatgacattgttaatgcatcttggttgttggaaagtttagaacgcaagcag
atggtgccatggttaccatgtcacatgatccacatgtcatcgaagacaatagagaagttt
tctcttgagtacgatgagaacggtgacagtttcaccaaagacttgaacgttgaaactttg
aaggaaatttttaaaaaattagatgaaagacaaaacgtagtgaagttgacaagaaatgac
ataattgaagtggaagagagatacatcaccaactcaaccctaggtctctttagatcatac
agattttacgtggatagatactcgacaattggtgatccacacacgcgcctacccagcagt
agccttcacgtgcagacatatgtgctacgttattatggtggacatataagtgacactttt
gacgaagaagtcagtcacgtgatcacgagcccgcgggatttctcgagggtaccagtcatt
caacagataatgcacaggagaacacgtttcgcgcacattgtaacagaaacatggattacc
gagtgtgtgcaagttggtgctatattaaaagaacaagattaccgtccaataattgatgat
gttttggaataa
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