KEGG   Xanthomonas euroxanthea: XSP_000116
Entry
XSP_000116        CDS       T07902                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xeu  Xanthomonas euroxanthea
Pathway
xeu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xeu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    XSP_000116 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xeu03400]
    XSP_000116 (ligD)
Enzymes [BR:xeu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XSP_000116 (ligD)
DNA repair and recombination proteins [BR:xeu03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XSP_000116 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S
Other DBs
NCBI-ProteinID: CAD1786000
UniProt: A0A8E4DNN7
LinkDB
Position
1:136197..138953
AA seq 918 aa
MSLRDYNAKRRFDQTPEPAGDTPARASKQPIFVVQLHHASSRHYDFRLELDGVLKSWAVP
KGPSLRVGEKRLAVEVEDHPLSYASFAGDIPQGHYGAGHVEVFDHGHWQCEGDALAALDA
GKLEFELRGSLLRGGFALVRTQMRGGKPQWLLFKRSDAYAADLDADALVAQQAAGASAAA
APATRAKASRARRAPAAKTSAATSPAASKRARPARARSAQWHTRALALDGARDAPCPTEL
RAQLTLLREQAPDGERWLHEIKWDGYRLLADLVDGEVQLRSRNDQAWTQRFPEVVRAVQA
LPVRDARLDGELVVLDAKGRTDFSALQRALDGSAVQPLRYIVFDLLGVAGVDLRDTPLLQ
RKQLLRELLGDAPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLADAPYRAGRSADWVK
TKHEDSDEFVVVGYTDPKGARSGFGALLMAQRDGKTLRYVGRVGTGFDDALLGKITALLQ
ALHSDTATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRLREDKPMSE
LGGDRATPGKARAAGKRGAATAAAPARTTATRKTSRTTVDASTSTTSKRTRSTASKTTAT
TTSKKAAATSTASKSTTSKSKSTSTSMSTDGITITHPERVVFPAAGISKGEVADYYRAVA
PLVLAEIARRPLSLLRCPDGAGGDCFFQKHEGRHLGTHIKAIPLQQKSGAEDYIYVEDAA
GLLELVQMNTLELHPWGAQVDDPEHPDRLVFDLDPGEAVSWADVVAAARDIRAKLRSAGL
ESAVRLSGGKGLHVVVPIVPEADWEQARDFCEAFAQALATHAPDRYVATMSKAKRHGVIF
VDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALERARRQRADP
WASVLALQQSLPTGGDKN
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgtcactgcgcgactacaacgccaaacgccgcttcgaccagaccccggagccggccggc
gacacgcccgcacgcgccagcaagcagccgatcttcgtggtgcaactgcatcacgccagc
tcgcgtcattacgacttccgtctggaactcgacggcgtgctcaagagctgggccgtgccc
aagggaccctcgttgcgcgtgggcgaaaaacgcctggcggtagaggtggaagaccacccg
ctgtcgtacgccagcttcgcgggcgatatcccgcaaggccattacggcgccgggcatgtg
gaggtgttcgaccacgggcattggcagtgcgaaggcgatgcgttggcggcgctggacgcc
ggcaagctggaattcgaactgcggggctcattgctgcgcggtggcttcgccttggtgcgc
acgcagatgcgtggcggcaaaccgcagtggctgttgttcaagcgcagtgatgcgtatgcg
gccgatctggatgccgatgcgctggtggcgcagcaggcggccggcgcatcggcagcggcc
gccccggcgacgcgtgccaaggccagccgggctcggcgtgcaccagcggcaaaaacgagc
gccgcaacgtcgcctgcggccagcaaacgtgcacgcccagcgcgtgcacgttccgcgcaa
tggcatacccgcgccctggcgctggacggcgcccgcgacgcgccatgccccaccgagctg
cgcgcgcaactgaccttgctgcgcgagcaggcgcccgatggcgagcgctggttgcacgag
atcaagtgggacggctaccgcctgctggccgatctggtcgatggcgaggtgcagctgcgc
tcgcgcaacgaccaggcctggacgcagcgcttcccggaggtggtgcgcgcagtgcaggcc
ttgccggtgcgcgatgcgcgcctggatggcgagctggtggtgctggatgccaaggggcgc
accgatttctcggcgctgcagcgtgcgctcgatggcagcgccgtgcagccgctgcgctac
atcgtgttcgacctgctgggcgtggccggggtggacctgcgcgataccccgttgctgcaa
cgcaagcagttgctgcgcgagttgctgggcgatgcgccgggcacactggcgttcagcgac
catgtgatcggccatggcccggaggtcttcgcggccagcgccggcaccggctgggaaggc
atcgtcagcaagctcgccgatgcgccctaccgtgcaggacgcagcgccgattgggtcaag
accaagcacgaggacagcgacgagttcgtggtggtggggtacaccgatcccaagggcgca
cgcagcggctttggcgccttgctgatggcgcagcgcgacggcaagacgctgcgttatgtc
gggcgtgtgggcaccgggttcgacgatgccttgctcggcaagatcaccgcgctgctgcag
gcgctgcacagcgacaccgccacgctggaattgcccacgcacatcccggggcggccacgc
gatgtgcattgggtccggccggtgctgatcgccgaggtcgccttccgcggctgggcgaag
gaaggcctgctgcggcaggctgcgttcaagcgtctacgtgaggacaaacccatgagcgag
ttgggcggcgaccgcgccacgccgggcaaggcgcgtgctgcgggcaaacgtggtgcggca
acggccgctgcgccggcgcgcacgacggcgaccaggaaaacatccagaacgacagtcgac
gcatccaccagcaccaccagcaaacgcacgcgttcgacggcatcgaagacgaccgcgacc
acgacatccaaaaaggcggcggccacgtccacggcgtccaagtccacaacatccaaatcc
aaatctacgtccacgtccatgtcgacagacggcatcaccatcacccatccagagcgggtg
gtgttccccgcagcgggcatcagcaagggcgaggtggccgactactaccgggcagtggcg
ccgctggtgctggcggagatcgcacgccggcccctgtcgctgctgcgctgccccgatggc
gccggtggcgattgcttcttccagaagcacgaaggccgccacctgggtacgcacatcaag
gcgattccgctgcagcaaaaaagcggcgccgaggattacatctatgtcgaagatgccgcc
ggcttgctcgagctggtgcagatgaacacgctggagctgcatccctggggcgcgcaggtc
gacgatccggagcatccggatcggctggtgttcgacctggaccccggcgaggcggtgtcc
tgggccgacgtggtggctgccgcgcgcgatatccgcgccaagctgcgcagcgcggggctg
gaaagcgcggtgcgcctgtccggcggcaagggcctgcatgtggtggtgccgatcgtgccg
gaagcggactgggagcaggcgcgcgatttctgcgaggcattcgcccaggcgctggcaacg
catgctcctgaccgctatgtggccaccatgagcaaggccaagcgccacggcgtgatcttc
gtcgactggctgcgcaacgggcgcggcaacaccagcgtctgttcgtggtcgctgcgcgcg
cgcgaaaaagccaccgtcgccgtcccgctacgctgggaagaactcggcaagatcagcggc
ccggacgccttcccgatggacaaggcgctggaacgcgccaggcgccaacgcgcagatccc
tgggcctcggtgctggcgttgcagcaatccttgcctaccggcggcgataagaactaa

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