Xanthomonas euroxanthea: XSP_000116
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Entry
XSP_000116 CDS
T07902
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xeu
Xanthomonas euroxanthea
Pathway
xeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XSP_000116 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xeu03400
]
XSP_000116 (ligD)
Enzymes [BR:
xeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XSP_000116 (ligD)
DNA repair and recombination proteins [BR:
xeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XSP_000116 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAD1786000
UniProt:
A0A8E4DNN7
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All DBs
Position
1:136197..138953
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AA seq
918 aa
AA seq
DB search
MSLRDYNAKRRFDQTPEPAGDTPARASKQPIFVVQLHHASSRHYDFRLELDGVLKSWAVP
KGPSLRVGEKRLAVEVEDHPLSYASFAGDIPQGHYGAGHVEVFDHGHWQCEGDALAALDA
GKLEFELRGSLLRGGFALVRTQMRGGKPQWLLFKRSDAYAADLDADALVAQQAAGASAAA
APATRAKASRARRAPAAKTSAATSPAASKRARPARARSAQWHTRALALDGARDAPCPTEL
RAQLTLLREQAPDGERWLHEIKWDGYRLLADLVDGEVQLRSRNDQAWTQRFPEVVRAVQA
LPVRDARLDGELVVLDAKGRTDFSALQRALDGSAVQPLRYIVFDLLGVAGVDLRDTPLLQ
RKQLLRELLGDAPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLADAPYRAGRSADWVK
TKHEDSDEFVVVGYTDPKGARSGFGALLMAQRDGKTLRYVGRVGTGFDDALLGKITALLQ
ALHSDTATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRLREDKPMSE
LGGDRATPGKARAAGKRGAATAAAPARTTATRKTSRTTVDASTSTTSKRTRSTASKTTAT
TTSKKAAATSTASKSTTSKSKSTSTSMSTDGITITHPERVVFPAAGISKGEVADYYRAVA
PLVLAEIARRPLSLLRCPDGAGGDCFFQKHEGRHLGTHIKAIPLQQKSGAEDYIYVEDAA
GLLELVQMNTLELHPWGAQVDDPEHPDRLVFDLDPGEAVSWADVVAAARDIRAKLRSAGL
ESAVRLSGGKGLHVVVPIVPEADWEQARDFCEAFAQALATHAPDRYVATMSKAKRHGVIF
VDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALERARRQRADP
WASVLALQQSLPTGGDKN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcgcgactacaacgccaaacgccgcttcgaccagaccccggagccggccggc
gacacgcccgcacgcgccagcaagcagccgatcttcgtggtgcaactgcatcacgccagc
tcgcgtcattacgacttccgtctggaactcgacggcgtgctcaagagctgggccgtgccc
aagggaccctcgttgcgcgtgggcgaaaaacgcctggcggtagaggtggaagaccacccg
ctgtcgtacgccagcttcgcgggcgatatcccgcaaggccattacggcgccgggcatgtg
gaggtgttcgaccacgggcattggcagtgcgaaggcgatgcgttggcggcgctggacgcc
ggcaagctggaattcgaactgcggggctcattgctgcgcggtggcttcgccttggtgcgc
acgcagatgcgtggcggcaaaccgcagtggctgttgttcaagcgcagtgatgcgtatgcg
gccgatctggatgccgatgcgctggtggcgcagcaggcggccggcgcatcggcagcggcc
gccccggcgacgcgtgccaaggccagccgggctcggcgtgcaccagcggcaaaaacgagc
gccgcaacgtcgcctgcggccagcaaacgtgcacgcccagcgcgtgcacgttccgcgcaa
tggcatacccgcgccctggcgctggacggcgcccgcgacgcgccatgccccaccgagctg
cgcgcgcaactgaccttgctgcgcgagcaggcgcccgatggcgagcgctggttgcacgag
atcaagtgggacggctaccgcctgctggccgatctggtcgatggcgaggtgcagctgcgc
tcgcgcaacgaccaggcctggacgcagcgcttcccggaggtggtgcgcgcagtgcaggcc
ttgccggtgcgcgatgcgcgcctggatggcgagctggtggtgctggatgccaaggggcgc
accgatttctcggcgctgcagcgtgcgctcgatggcagcgccgtgcagccgctgcgctac
atcgtgttcgacctgctgggcgtggccggggtggacctgcgcgataccccgttgctgcaa
cgcaagcagttgctgcgcgagttgctgggcgatgcgccgggcacactggcgttcagcgac
catgtgatcggccatggcccggaggtcttcgcggccagcgccggcaccggctgggaaggc
atcgtcagcaagctcgccgatgcgccctaccgtgcaggacgcagcgccgattgggtcaag
accaagcacgaggacagcgacgagttcgtggtggtggggtacaccgatcccaagggcgca
cgcagcggctttggcgccttgctgatggcgcagcgcgacggcaagacgctgcgttatgtc
gggcgtgtgggcaccgggttcgacgatgccttgctcggcaagatcaccgcgctgctgcag
gcgctgcacagcgacaccgccacgctggaattgcccacgcacatcccggggcggccacgc
gatgtgcattgggtccggccggtgctgatcgccgaggtcgccttccgcggctgggcgaag
gaaggcctgctgcggcaggctgcgttcaagcgtctacgtgaggacaaacccatgagcgag
ttgggcggcgaccgcgccacgccgggcaaggcgcgtgctgcgggcaaacgtggtgcggca
acggccgctgcgccggcgcgcacgacggcgaccaggaaaacatccagaacgacagtcgac
gcatccaccagcaccaccagcaaacgcacgcgttcgacggcatcgaagacgaccgcgacc
acgacatccaaaaaggcggcggccacgtccacggcgtccaagtccacaacatccaaatcc
aaatctacgtccacgtccatgtcgacagacggcatcaccatcacccatccagagcgggtg
gtgttccccgcagcgggcatcagcaagggcgaggtggccgactactaccgggcagtggcg
ccgctggtgctggcggagatcgcacgccggcccctgtcgctgctgcgctgccccgatggc
gccggtggcgattgcttcttccagaagcacgaaggccgccacctgggtacgcacatcaag
gcgattccgctgcagcaaaaaagcggcgccgaggattacatctatgtcgaagatgccgcc
ggcttgctcgagctggtgcagatgaacacgctggagctgcatccctggggcgcgcaggtc
gacgatccggagcatccggatcggctggtgttcgacctggaccccggcgaggcggtgtcc
tgggccgacgtggtggctgccgcgcgcgatatccgcgccaagctgcgcagcgcggggctg
gaaagcgcggtgcgcctgtccggcggcaagggcctgcatgtggtggtgccgatcgtgccg
gaagcggactgggagcaggcgcgcgatttctgcgaggcattcgcccaggcgctggcaacg
catgctcctgaccgctatgtggccaccatgagcaaggccaagcgccacggcgtgatcttc
gtcgactggctgcgcaacgggcgcggcaacaccagcgtctgttcgtggtcgctgcgcgcg
cgcgaaaaagccaccgtcgccgtcccgctacgctgggaagaactcggcaagatcagcggc
ccggacgccttcccgatggacaaggcgctggaacgcgccaggcgccaacgcgcagatccc
tgggcctcggtgctggcgttgcagcaatccttgcctaccggcggcgataagaactaa
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