Xylella fastidiosa subsp. fastidiosa GB514: XFLM_06325
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Entry
XFLM_06325 CDS
T01979
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xff
Xylella fastidiosa subsp. fastidiosa GB514
Pathway
xff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFLM_06325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xff03019
]
XFLM_06325
03009 Ribosome biogenesis [BR:
xff03009
]
XFLM_06325
Enzymes [BR:
xff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XFLM_06325
Messenger RNA biogenesis [BR:
xff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XFLM_06325
Ribosome biogenesis [BR:
xff03009
]
Prokaryotic type
rRNA helicases
XFLM_06325
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
CMS1
AAA_22
Flavi_DEAD
P-loop_SecA
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ADN63198
LinkDB
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Position
complement(1381272..1383101)
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AA seq
609 aa
AA seq
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MSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQ
QLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKL
PASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKR
PQRNAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVL
DLPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKS
TKPKPPYSG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccatcttctacaccgctgctgtttgcagatctcggcctctccgatgctgtg
atgcaagccgtcacaaaaatcggctacgaaactccgtcgcccatccaggcggcgaccatc
ccagccttgcttgctgggcgcgatgtgctgggccaagcccagaccggcactgggaagact
gccgcattcgcgctaccgttgctcacacgcaccgttctgaaccaggtcaagccgcaagtg
ctcgtactggcacccacccgcgaactggctatccaagttgccgaagcattccagcgctat
gctgcctcgatctctggcttccgtgtcctacccgtgtacggcggccaatcctatggccaa
caactggccgcactgaaacgcggtgtccatgtgatcgtcggtaccccgggccgggtgatt
gatcacctagagcgcggcaccctggatctatcggaattaaaaacgctggtcctcgacgaa
gccgacgaaatgctgcgtatgggtttcattgaggacgttgaagaagtcctacggaagttg
cccgcttcacgccaggtcgctctgttctcggcaaccatgccaccacagatccgccgtatc
gcacaaacctatctacaagatccgattgaagtcaccatcgccaccaaaaccacgaccgca
gccaacatccgccaacgttactggtgggtcagcggcctccacaagctagatgcactcaca
cgcattcttgaggtggaaaccttcgacgcaatgattatcttcgtgcgcaccaaagctgcc
accgaagaattggccgagaaattgcaggcacgtggcctgaccgccgcagcgatcaatggc
gatatgcaacaagcgcaacgcgaacgcaccattcaccaactcaaagatggcaagctggat
atcctcgttgccaccgacgtcgccgcacgtggtttggacgtagaacgtatcagccacgtg
ctgaactacgacatcccttacgacgttgagagctacgtccaccgtatcggacgcactggg
cgtgccggtcgcagcggcgaagcaatcctctttgtgactccgcgcgaaaaaggcatgctg
cgccagattgaacgtgccactcaccaaccgatcgaagccatgcaactgcccagtgtggat
gcagtcaacgacacgcgcgtgaccaaatttttcggacgcatcagcaatgctctggtggtc
ggcgctgaaatcgacttctaccgcaaactgctacaacgtttcgagagcgagcacaatgtc
cctgccattgagatcgctgctgccctggcacgactccttcagggggatagccccttcctg
ctgagtgtcccgacgcgcccccaacgcgagcgcagcgagctggcatccgagcatcatgtc
aaacgcccctcatccttcaagcagacagagcgtccaaacaacactgaacaccccaagcgc
ccccaacggaacgcacctgcccgcaatgtcccagagttcggtatggagtcttaccgcatc
gaagtcggccgcatgcacggtgtgaagccagccaatatcgtcggcgctatcgccaacgaa
gctggattagagagccgctacattggccggattgacatccgtgacgatcactcggttctg
gatctccccgcagaaatgccacacgagatcctgcaacacctaaaaaaggtctgggtatca
ggacagcaactacaaatgcgtcggatcgacacaaccgaaacaaccgcacctgcacgggaa
tttaagtcaaaaccgggtggcgctggcaaattcccgccgaaaccgcatcacaacaaatca
accaaaccaaaaccaccatacagcggttga
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