Xylella fastidiosa M23: XfasM23_0191
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Entry
XfasM23_0191 CDS
T00692
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfn
Xylella fastidiosa M23
Pathway
xfn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XfasM23_0191
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfn03019
]
XfasM23_0191
03009 Ribosome biogenesis [BR:
xfn03009
]
XfasM23_0191
Enzymes [BR:
xfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XfasM23_0191
Messenger RNA biogenesis [BR:
xfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XfasM23_0191
Ribosome biogenesis [BR:
xfn03009
]
Prokaryotic type
rRNA helicases
XfasM23_0191
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
CMS1
AAA_22
Flavi_DEAD
P-loop_SecA
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ACB91648
UniProt:
B2I738
LinkDB
All DBs
Position
complement(261227..263056)
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AA seq
609 aa
AA seq
DB search
MSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVAEAFQRYAASISGFRVLPVYGGQSYGQ
QLAALKRGVHVIVGTPGRVIDHLERGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKL
PASRQVALFSATMPPQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALT
RILEVETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGRSGEAILFVTPREKGML
RQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRISNALVVGAEIDFYRKLLQRFESEHNV
PAIEIAAALARLLQGDSPFLLSVPTRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKR
PQRNAPARNVPEFGMESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVL
DLPAEMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPKPHHNKS
TKPKPPYSG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatccatcttctacaccgctgctgtttgcagatctcggcctctccgatgctgtg
atgcaagccgtcacaaaaatcggctacgaaactccgtcgcccatccaggcggcgaccatc
ccagccttgcttgctgggcgcgatgtgctgggccaagcccagaccggcactgggaagact
gccgcattcgcgctaccgttgctcacacgcaccgttctgaaccaggtcaagccgcaagtg
ctcgtactggcacccacccgcgaactggctatccaagttgccgaagcattccagcgctat
gctgcctcgatctctggcttccgtgtcctacccgtgtacggcggccaatcctatggccaa
caactggccgcactgaaacgcggtgtccatgtgatcgtcggtaccccgggccgggtgatt
gatcacctagagcgcggcaccctggatctatcggaattaaaaacgctggtcctcgacgaa
gccgacgaaatgctgcgtatgggtttcattgaggacgttgaagaagtcctacggaagttg
cccgcttcacgccaggtcgctctgttctcggcaaccatgccaccacagatccgccgtatc
gcacaaacctatctacaagatccgattgaagtcaccatcgccaccaaaaccacgaccgca
gccaacatccgccaacgttactggtgggtcagcggcctccacaagctagatgcactcaca
cgcattcttgaggtggaaaccttcgacgcaatgattatcttcgtgcgcaccaaagctgcc
accgaagaattggccgagaaattgcaggcacgtggcctgaccgccgcagcgatcaatggc
gatatgcaacaagcgcaacgcgaacgcaccattcaccaactcaaagatggcaagctggat
atcctcgttgccaccgacgtcgccgcacgtggtttggacgtagaacgtatcagccacgtg
ctgaactacgacatcccttacgacgttgagagctacgtccaccgtatcggacgcactggg
cgtgccggtcgcagcggcgaagcaatcctctttgtgactccgcgcgaaaaaggcatgctg
cgccagattgaacgtgccactcaccaaccgatcgaagccatgcaactgcccagtgtggat
gcagtcaacgacacgcgcgtgaccaaatttttcggacgcatcagcaatgctctggtggtc
ggcgctgaaatcgacttctaccgcaaactgctacaacgtttcgagagcgagcacaatgtc
cctgccattgagatcgctgctgccctggcacgactccttcagggggatagccccttcctg
ctgagtgtcccgacgcgcccccaacgcgagcgcagcgagctggcatccgagcatcatgtc
aaacgcccctcatccttcaagcagacagagcgtccaaacaacactgaacaccccaagcgc
ccccaacggaacgcacctgcccgcaatgtcccagagttcggtatggagtcttaccgcatc
gaagtcggccgcatgcacggtgtgaagccagccaatatcgtcggcgctatcgccaacgaa
gctggattagagagccgctacattggccggattgacatccgtgacgatcactcggttctg
gatctccccgcagaaatgccacacgagatcctgcaacacctaaaaaaggtctgggtatca
ggacagcaactacaaatgcgtcggatcgacacaaccgaaacaaccgcacctgcacgggaa
tttaagtcaaaaccgggtggcgctggcaaattcccgccgaaaccgcatcacaacaaatca
accaaaccaaaaccaccatacagcggttga
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