Xanthomonas citri pv. fuscans: XFF4834R_chr18150
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Entry
XFF4834R_chr18150 CDS
T03094
Symbol
deaD
Name
(GenBank) probable Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XFF4834R_chr18150 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xfu03019
]
XFF4834R_chr18150 (deaD)
03009 Ribosome biogenesis [BR:
xfu03009
]
XFF4834R_chr18150 (deaD)
Enzymes [BR:
xfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XFF4834R_chr18150 (deaD)
Messenger RNA biogenesis [BR:
xfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XFF4834R_chr18150 (deaD)
Ribosome biogenesis [BR:
xfu03009
]
Prokaryotic type
rRNA helicases
XFF4834R_chr18150 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
adh_short
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CDF61380
LinkDB
All DBs
Position
2072970..2074868
Genome browser
AA seq
632 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYESPSPIQAAAIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPAIRRIAQTYLKHPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAATEELAQKLQARGMAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIDMYRDLLQRYEAENNVP
AIDIAAALAKLLQGDAPFLLTPPVRGAREDTAPRERHERADRGDRPRFEPKFERGPRADG
ERAARPPRGDDAGERPRREPAPRGEPEFGMESYRIEVGHSHGVKPANIVGAIANEAGLES
RYIGRIDIQDDYSILDLPADMPRELLAHLKKVWVSGQQLNMRKLEDGEAAAAASKPRFPR
GGKPSGRPNGPGRPMDRAGAPHRKGPPKPRGE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagatctcggcctctcggacgctgtg
atgaaggccgttgccaatgtgggctacgagtcgccgtcgccgatccaggccgccgccatc
cccgcgctgctggccggccgcgacgtgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctcaaccaggtcaagccgcaggca
ttggtactggccccgacccgcgagctggccatccaggtcgccgaagcgttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtgtacggcggccagccgtatgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtcggcaccccgggccgggtgatc
gatcacctggaccgcggcaccctggacctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgatgtcgaagcggtgttgaagaaactg
ccggagcagcgccaggtggcgttgttctcggccaccatgccgccggccatccgccgcatc
gcgcagacctacctgaagcacccggccgaagtcaccatcgcggccaagaccaccacttcg
gccaatatccgccagcgctactggtgggtgagcggtctgcacaagctggatgcgttgacc
cgaattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggcggcc
accgaagagctggcgcagaagctgcaggcgcgcggcatggccgcagcggccatcaacggc
gacatgcagcaggccgcccgcgagaagaccatcgcccagctcaaggacggcaagctggac
atcctggtcgccaccgacgtggccgcacgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggtcgcaccggc
cgtgccgggcgtaacggtgacgcgatcctgttcgtgacgccgcgcgagaagggcatgctg
cgctccatcgaacgcgccacccgtcagccgatcgaggagatgcagctgccgagcgtggac
gcggtcaacgacacccgcgtcgcgcgcttcatgacccgcatcaccgagaccctggccggt
ggccagatcgacatgtaccgcgacctgctgcagcgctacgaggccgaaaacaacgtgccg
gcgatcgatatcgctgccgcgctggccaagctgctgcagggcgatgccccgttcctgctg
accccgccggtgcgcggtgcgcgcgaggatactgcgccgcgcgaacgtcatgagcgtgcc
gaccgcggcgatcgcccccgcttcgagccgaagttcgaacgtggcccgcgtgccgacggc
gagcgcgctgcgcgtccgccgcgcggcgacgatgccggcgagcgtccgcgccgcgagccg
gccccgcgtggggagccggagttcggcatggagagctaccgcatcgaagtgggccacagc
cacggcgtgaagccggccaacatcgttggcgcgatcgccaacgaagccgggctggaaagc
cggtatatcggtcgtatcgacatccaggacgattattcgatcctggatctgccggccgac
atgccgcgcgaactgctcgcccacctgaagaaggtctgggtgtccggtcagcagctcaac
atgcgcaagctggaagacggcgaagcggccgctgcggcgtccaagccgcgcttcccgcgt
ggcggcaagccgtccggtcgcccgaacggcccgggccgtccgatggaccgcgccggcgcc
ccgcaccgcaagggtccgccgaagccgcgcggcgagtaa
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