Xanthomonas citri pv. fuscans: XFF4834R_chr24250
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Entry
XFF4834R_chr24250 CDS
T03094
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xfu
Xanthomonas citri pv. fuscans
Pathway
xfu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XFF4834R_chr24250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfu03400
]
XFF4834R_chr24250
Enzymes [BR:
xfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XFF4834R_chr24250
DNA repair and recombination proteins [BR:
xfu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XFF4834R_chr24250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CDF61943
LinkDB
All DBs
Position
complement(2798113..2800731)
Genome browser
AA seq
872 aa
AA seq
DB search
MSLSEYRRKRSFDKTCEPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAAAPADDV
RRAGASKTQRKALTSVPPPAAKKRGTWAKQALALSNARRAEMEDGPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRSAQIDGELI
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHVDGVDIGEAPLRERKQLLQQVLEAAPH
AHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLGSQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGPATSS
STPRWAKTRAAKNAATQVPKRAATRATAAARKSAVATPGSAALPTLSSPTKLIYPDIRAT
KGDVWDYYHAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFPEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQSEPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDRIRQNLARWAEQDED
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgagcgaataccgccgcaagcgcagcttcgacaaaacctgcgagccggagccg
ggcaagaccctgccgccggggcagcgcgcgatcttcgtggtgcaactgcaccacgccagt
cgccgccactacgattttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggccaagttacgaccccaaggtcaagcggatggcagtggaggtggaagaccacccg
gtcgattacgccagcttcgagggcgagattcccaggggcgagtacggcggcgggcacgtg
gcgcagttcgatcatggcgtgtgggccaccgcaggcgaccccgaagcgcagttggccaag
gggcatctgcgcttcgagttgttcggcaacaagctcaagggcggctggcatttggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaagaggatgatgcctacgcc
ggcacgttggaggccgacgacctactggccgacgtcgctgccgcgcctgccgacgatgta
cgccgcgcgggtgccagcaagacccagcgcaaggcgctgacgagcgtaccaccgccagcg
gcaaaaaagcgtggtacctgggcgaaacaagcgctggcgctgagcaatgcacgtcgcgcc
gagatggaagatggcccgtttgcgccgcagctggccaagctggggcagtccccgcccgaa
ggcgcgcagtggctgcatgaaatcaaatgggacggttatcgcatcctggccactgtgacc
aatggcaaggtgaggctgtggtcgcgcaatgcattggagtggaccgacaagacaccggaa
attgccgatgccatccagtcgctggggctgcgcagtgcgcagatcgatggcgaattgatc
gccggacgcggcaccaaggaagacttcaacctgctgcaggccaccttgtccggcgaacgc
caggtgccgctggcgctggcggtattcgacctgctgcatgtggatggggtggacatcggc
gaggcaccgttgcgcgagcgcaagcagctgttgcagcaggtgctggaggctgcaccccac
gcgcacctggcctatagctcgcacgtcgagggcgacggcaccgaggcgttccgggtggcc
ggcgaacagcacttcgaaggcatcatttccaagcgcgcagatcgcccgtatcgcgatggg
cgtagcgacgattggcgcaagaccaagcaactgggcagccaggaatatgcagtggtcggc
tacacggcgcccaagggcagccgcagtggttttggctcgctgttgctggccacgccggac
ccggtgcacggctggctgtacgtcggccgtgtgggctcaggtttctccgatgccttgatg
cgcgaggtcacccagcaactggaaggcggtgggcgcaaacccactgcgcatattcccacc
gaagataccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcatcggtgggcaacagttgttgcgccaggcatcgttcaaggcgctgcgtccg
gataaacgcattgccgatctggccgacagcgatgccggaaatggcccggctacttcgtcg
tctaccccgcgttgggcaaaaacacgtgctgccaaaaacgcggcaacccaggtgccgaaa
cgtgcagcgacgcgggcaacagcagctgcgcgcaaatctgcggttgctacacctggctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggattactaccatgcggtgatggatcacctgttgccgcagatcgtg
ggacgcccgctgtccatcatccgctgccccagcggcgcagaaaaaccgtgttttttccag
aagcaccacaccgccggcctcgagcgtgtgagctcggtcaaactgaccgaagaaaccggc
accaatgcgtattacctggtggtcgaagacgcacctggcctgctggagctggtgcaattc
aatgcgctggaattccatccctggggctcgcatgccgaccgcccggatgtggccgaccgg
gtggtcttcgatctcgacccgggcccggacgtgccgttccccgaggtcaaacgtgccgcc
aacgatattcgtaagctgctggcgcaattggagctggaatcgttcctgcgtgtctctggc
ggcaaggggctgcacgtggtggtgcccctgaaccccggctgcgactgggaggtgaccaag
cgttttgccaagggatttgccgatgcccttgcgcagtccgagccgcagcggttcatcgcc
actgccaccaagcggctacgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccacggcggtcgcgtcctattccttacgcggccgcccaggggcgccggtcgcgttg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgacgcattcaccttgcgcgat
gtgccggaaaagctgcgccgtcggcgcaaggacccgtgggcagacatggaccgcattcgg
cagaacctggcgcgctgggcggagcaggacgaggactga
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