Xanthomonas hortorum pv. gardneri: BI317_16230
Help
Entry
BI317_16230 CDS
T04668
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xga
Xanthomonas hortorum pv. gardneri
Pathway
xga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BI317_16230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xga03019
]
BI317_16230
03009 Ribosome biogenesis [BR:
xga03009
]
BI317_16230
Enzymes [BR:
xga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BI317_16230
Messenger RNA biogenesis [BR:
xga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BI317_16230
Ribosome biogenesis [BR:
xga03009
]
Prokaryotic type
rRNA helicases
BI317_16230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
APP85489
LinkDB
All DBs
Position
complement(3484441..3486366)
Genome browser
AA seq
641 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPQRNERADRGDRGERPRFEPKFERGPRA
DGERAARPPRAERPAFAGDGAERPRRDPVAPRGEPEVGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
SPSKPRFPRSGKPAGRPNGPNRPMDRAGAPHRKGPPKPRGE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaagccgttgccaacgttggctacgagaccccttcgccgatccaggctgccaccatt
cccgcgctgcttgccggccgcgacgtcctcggccaggcgcagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctgaaccagctcaagccgcaggcg
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggccttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggtggccagccctacgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtgggcactcccggccgcgtgatc
gatcacctggatcgcggcaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgctgttttccgcgaccatgccgccggcgatccgccgtatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagacgaccacctcg
gccaacatccgccagcgctattggtgggtgagcggcttgcacaagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccggt
accgaagaactggcgcagaagctgcaggcgcgcggtctggccgctgccgccatcaacggc
gacatgcagcaggccgcccgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggttgccaccgacgtggccgcacgcggcctggacgtggagcgcgtcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggc
cgtgccggccgcaccggcgatgcgatcctgttcgtcaccccgcgtgagaagggcatgctg
cgttcgatcgagcgcgcgacccgtcagccgatcgaagaaatgcagctacccagcgtggat
gcggttaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccttggccggc
ggccagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgatatcgccgcggcgatggccaagttgctgcaaggcgattcgccgttcctgctg
accccgccggtgcgtggcgcacgcgaggaattcgcaccgcagcgcaacgagcgtgccgat
cgcggtgatcgtggcgagcgtccgcgcttcgagccgaagttcgagcgtggcccgcgtgcc
gatggcgagcgcgctgcgcgtccgccgcgtgccgagcgccctgcgtttgccggtgacggc
gccgagcgtccgcgtcgcgacccggtcgctccgcgtggcgaaccggaggtcggcatggag
agctaccgcatcgaagtgggccacacccacggcgtgaagccggccaacatcgtcggcgcg
atcgccaacgaagcgggtctggaaagccgctacatcggccgtatcgacatccaggatgat
tattcgattctggatctgccggccgacatgccgcgcgaattgctgacgcacctgaagaag
gtctgggtgtccggccagcagctcaacatgcgcaagctggaagagggcgaggctgcggct
tcgccatccaagccgcgcttcccgcgtagcggcaagccggccggtcgcccgaatgggccg
aaccgtccgatggaccgtgccggtgcgccgcatcgcaagggtccgcccaagccgcgcggc
gagtaa
DBGET
integrated database retrieval system
