Xiphias gladius (swordfish): 120783570
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Entry
120783570 CDS
T07311
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04510
Focal adhesion
xgl04512
ECM-receptor interaction
xgl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120783570
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120783570
09142 Cell motility
04820 Cytoskeleton in muscle cells
120783570
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xgl04147
]
120783570
00536 Glycosaminoglycan binding proteins [BR:
xgl00536
]
120783570
Exosome [BR:
xgl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120783570
Glycosaminoglycan binding proteins [BR:
xgl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120783570
Hyaluronan
Extracellular matrix or blood plasma proteins
120783570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
DUF1194
Integrin_beta
GpA_nuclease
Motif
Other DBs
NCBI-GeneID:
120783570
NCBI-ProteinID:
XP_039972554
LinkDB
All DBs
Position
LG22:complement(29149597..29223181)
Genome browser
AA seq
2789 aa
AA seq
DB search
MEILRKYQCLKSSRREKPGGHSASMEGKQGFLLGLIMAACFYGNTAQKTVCTQEAVADIV
FMVDGSWSIGTDNFEQIRQFLYTLVNSFDVGPDHVRIGLVQYSNTPRTEFLFNTYQNKQD
ILQYISKLPYMGGGTQTGQGLDFMLKEHFLEAAGSRAGQNVPQIAVVITDGKSQDNVESH
AQDLKRKGIVLYAIGIKDADEEQLKEIANEPHSQHVYSVSDFTALQGISQSIVQTLCTTV
EEAKRQILQLSRECAKATVADIVFLVDGSSSIGNQNFQEARRFLRSVITGLDIGPDNVRV
GLAQYSDEPYQEFLLKDHMDKQSLLAEIDKFPYRTGGTQTGKAIEFLLQNYFTEVAGSRA
SQRVPQIALIITDGDSTDNVTTPAQHLRQHGVIVFAIGVGQVNQKELRHIASQPAERFLL
TTDSYQALERLREGLLQTVCVSMEDQRQALAQKFADIVFLVDSGMSSGDFQQVRTTLIRL
VNQLNIGESAIRFGLAQYGQDTKVEFFLNSYKTKEDTLSGVKRFRQRRLQPNEQRRLGSA
LDYARTNLFSSEKGSRADRGYRQYLVVLSGKDSDDPVYKQSRLIKSEGIIVVGMSLGASM
DEIRLIATGRYTFPSISNTVPALKAIFEKEEEELTPTEDCKTAKLADIVFIVDESGSIGT
ANFQLVRSFLHSIVSGLEVSPGKVRVGIVMYNDRPTAQVYLDSFDDRKELLKFIKILPYR
GGGTSTGAALKFTRENVFVKERGCRKDKGIQQVAVVITDGESQDNVSKEAADLRRAGVTV
YSVGVKAAKETELKEMASYPHKRHVFNVDSFVKLKSLEQSLQKIICVNILRKAISVNTRR
TGIKKGCLKTDEADIFFLIDHSGSIQPLDFQDMKKFIIEFLHTLHIGPKHVRIGVAKFAG
SPNIEFDLTAYSDAQTLEKAVEGIRQIGGGTNTGEALEFMVPQFKKAVTTRGYKVKEYLV
VITDGKSSDNVKAPADKLRAEGVIVYAIGVKNADENELLEISGNPERTFFVSNFDSLKLI
KDDVITDICSPDACKNIPGDLLFLIDSSGSIYPEDYNKMKDFIKSVISKSFIGKNEVHVG
VMQFSSIQQLEFPLNRYYSREEMSNAIDQIQQIGGGTLTGKAIDDVSKYFDESEGGRSGL
RRSLIVITDGEAQDEVKGPAEALRAKGVVVYAIGVVNANTTQLLEISGSPDRTFSEKDFD
ALNDLDSQVALELCKTECWTIEKADIIFLVDGSTSITSVKFKSMQRFMESLVNLTTVGEK
RTRFGVILYSTNPRSVFTLKDYTSKRDVLQAIAALKSPTGDTYTSKALAYSLQFFDAENG
GRAKSKVPQILMVITDGDATDRNDLVAPSTELRKNGIQVFSIGVEGAQMEQLQIMAGNDK
SRVFYVDNFEALETLQKNISERLCNFTNPACEKQQADLVFLIDESGSISQDDYTIMKNFT
VDLLKSFKVGADLVRIGLGQFSDSFRDEFHLNRFYTEQEVTKHVLSMEQRHGGTKIGMAL
DKIMEYFEASKGGRRDQKISQNLVLITDGESQDDVEDAADRLRNLGIEVFAIGIGDVHDL
QLLQITGSPQRLFTVQNFGSLEKIKQNVVNTICESPRSSCSIDIAVGFDISQRTGAPGEM
LTSGHPKLHKFLPEIVHYISSVKGLCCISPESVPTNIAYRLVDRDGLMIDDFNFEPYSKE
VLMKVMTLNLRVPTYFNTGLLTSFEQKFKAESGAGVKVLLIFSDGLDESVEKLEDGLNSL
RKSGVSALLTVALEGVRDPTQLQRVEFGRGFGYKLPLSIGMPSVGSTVLKQIDTVAEREC
CSVTCKCSGHEGIRGSRGPPGTKGVTGQKGYAGFPGEEGVVGDRGPPGPSGPQGVEGCSG
IRGLKGYRGLRGNRGEDGEDGLDGVNGEQGVKGSGGAQGERGDPGNPGIPGIRGEEGLKG
QRGLRGDPGESGADNTIQGARGDPGNPGLPGRPGLDGQPGEMGVLGNQGPDGRRGSLGDK
GTPGKPGALGLLGSPGASGPQGPRGVRGQPGLRGIPGLPGPQGEPGTAGDPGSAGRRGAN
GQKGQPGDPGVKGSPGSLGARGIPGQDGKDGYGPPGPQGVKGDPGFPGYPGLLGEDGLQG
PKGYPGPEGNRGRRGNSGLSGDSGIPGEEGYPGHRGPRGSPGHKSMTECQLITYIRENCA
CSIGQSKCPAYPTELVFGLDMSEDVTPVAFERQRAVLLSLLEDITIAESNCPTGARVAVV
AYSAHTKYLIRFHDYRQKKQLIESVKNIALERTSNRRQLGGAMRFVGQNVFKRVRAGMMM
RKVAVFLSNGPSQDINDIVTAVMEYQAINIAPAIISLRNAPAVSRALEVDDTGNSVFLVL
GRDMAADLSKVRNCVICYDPCHRSEECAFIQEPGQPQEVDVDLVMVVDSSREIQSDEYAG
IQQLLGSVVEQLAVTSKPHRAGHQARVALVQQAKVPKVEFDLQTYHNHSVMKRHMIQNMQ
QQGGSSALGHTLEFTLKEVFLKASQPRKRRVLLAVVATQTASADLHRLQHISKMAHCEGV
ALFVVAVGDGYSQTEVVKLASQPLQQHLIHVSRLRADEQGYAQRFFRVFLSALNKGFNKY
PPPTLKQTCALLAGQQEGDIFINGQGQVDLEEFEEEVQEEVEERFQEQVRGQTQTDQPDT
VETLTRGDDQRFDSGADLNARCQLDADIGFQCEDYVQVWYYDTHIGACSPFWYGGCGGNA
NRFNTENECFRTCGTNNPDILPRPELVTVVSEDACFRSQDPGGCQNYTMMWFFDSEKNEC
SRFWYGGCGGNENRFKTQEECENLCLTKS
NT seq
8370 nt
NT seq
+upstream
nt +downstream
nt
atggaaattctaagaaagtaccagtgcctcaaatcttccagaagagagaaacccgggggc
cattcagccagcatggaggggaagcagggttttctccttggcctcatcatggcagcgtgt
ttctatggcaacaccgctcagaaaacagtctgcacgcaagaggctgtagctgacatcgta
ttcatggtcgacgggtcgtggagtatcggcaccgacaacttcgagcagatccgtcagttt
ctgtacacgctggtcaacagcttcgatgttgggcccgaccatgtccgcatcggcctggtc
cagtacagcaacactccacgcacagagttcctgttcaacacctatcagaacaaacaggac
atactccagtacatcagcaaattaccttacatggggggcggcacccagacagggcagggt
ttggatttcatgctgaaagagcactttctggaggcagctggaagccgggccggccaaaac
gtgccgcagattgccgtggttatcactgacggcaaatcgcaagacaatgtggagtcccac
gcccaggatctgaagaggaagggaattgttttgtatgcaatcggtatcaaagatgcagat
gaagagcagctgaaagaaatagcgaatgagccccacagccagcacgtctacagcgtgtcc
gatttcacagctctgcagggaatttctcagagcatcgtccagacgctgtgcacaactgta
gaggaagccaaacgacaaatcctgcaattgtctcgagaatgtgccaaagccactgtggcc
gacatcgtcttccttgtcgatggctcctcaagcatcggcaaccaaaactttcaagaggcc
cggcggtttctccgcagtgtcatcacaggcctcgacattggccctgacaatgttcgggtc
ggcttggcacagtacagtgacgaaccttaccaagagttcctgctgaaggatcacatggac
aagcaatccctgctggctgagattgacaaatttccctaccgaacaggaggcacgcaaaca
ggcaaggccattgaattcctcctgcaaaattacttcacagaggtggccgggagcagagcc
agtcagcgagttcctcagatcgctctgatcatcacagatggtgattccacggataatgtg
acgactcctgcccagcatctgaggcagcacggggtcattgtgtttgccatcggggtggga
caagtcaaccaaaaggaactccggcacatcgccagccagcctgcagagcgcttcctcctc
accactgacagctaccaggctctggagaggctgagggagggtctgctgcaaactgtttgt
gtctccatggaggatcagaggcaagcattggcacaaaagtttgcagacattgtcttcctg
gtggacagcggcatgagttcaggagattttcagcaagtcaggaccaccctcatccgactg
gtcaatcaacttaacatcggagaatctgccatccgttttggcttggctcagtatggtcaa
gataccaaggtggaattttttctcaactcttacaaaaccaaagaagataccttgtccggt
gtcaagcgtttccgccagcgccgactgcaacccaacgagcaacgtcgcctgggcagtgca
ctagactatgcaaggactaaccttttcagcagtgagaaaggaagccgggcagaccgaggc
taccgacagtacctggttgttctaagtggaaaagactccgatgatcctgtgtataagcag
tcacgtttgatcaaatcagaaggaataattgtggtgggaatgagccttggcgcatcgatg
gacgaaattcgtctcatagccacaggacgctacacgttcccctctatcagtaacacagta
cctgcactgaaggctattttcgaaaaagaggaggaggaactcactcctactgaagattgt
aaaacagccaaactggcagacatcgtgttcattgttgatgagtcgggaagcattggaact
gccaacttccagctggtgcgcagtttcctgcactcaattgtgagcggcttggaagtcagc
ccaggtaaagtccgagttggcattgtgatgtacaacgacaggccgacagcacaggtctac
cttgacagcttcgatgacaggaaagaattgctgaagttcatcaaaatcctgccttaccgt
ggaggtggtacaagcactggagctgccctaaagttcacccgggagaatgtttttgtcaag
gaaagaggatgcaggaaagataagggcattcaacaggtggcagtggtgatcacagatggt
gaatcccaggacaatgtgagcaaagaagcagctgatctacgtcgggctggtgtcactgtt
tactctgtaggagtcaaagctgccaaggagaccgaactgaaagagatggcgtcctatccc
cacaaaaggcatgtgtttaatgtggacagttttgtcaaactgaaatctctggagcagagc
ctgcagaaaattatttgcgttaacatccttcgcaaggccatctcagtcaatacaagaaga
actggcatcaaaaaaggctgcctaaaaacagatgaagcagatatcttcttcctgattgat
cattcaggaagtattcaacccttagatttccaagacatgaagaagttcatcattgagttt
cttcacaccctccatattgggccaaaacatgttcgcattggggttgcaaaatttgcaggt
tcgccaaacatagaatttgatctgacagcctactcagatgcccagacactggagaaagct
gtggagggtatccgacaaataggaggcgggacaaacacaggagaagcgctggaattcatg
gtgccacagtttaagaaagcagtgacaactcgtgggtacaaagtcaaagagtacctggtg
gtcatcactgatggaaaatcctctgataatgtcaaggctcctgcagacaaactgagggcg
gagggtgtcatcgtctatgccatcggggtgaaaaacgcagatgaaaatgagctgctagag
atttccggcaaccccgagaggactttttttgtcagtaattttgattctctaaagctcatc
aaggacgacgtcatcacagacatctgttctccagatgcttgcaaaaacataccaggcgac
ctcctctttttgattgacagctctgggagcatctatccagaagactataataaaatgaaa
gacttcataaaatctgtcattagcaagtccttcatcgggaagaatgaggtgcatgttggt
gtcatgcaattcagcagtatccaacaactagagttccccctcaaccgttactacagcaga
gaagaaatgtccaatgccattgatcagattcagcagattgggggtggcacactcacaggt
aaagccatcgatgatgtgtcgaagtatttcgatgaaagcgaaggagggcgttctggcctg
cgtaggagtctgatagtgataacagatggtgaggcccaagatgaggtgaaaggccccgct
gaggctctgagagccaaaggagtggtggtttatgccattggggttgtgaatgccaacacc
actcagctgctggagatcagtggctcaccagacaggacattttctgagaaggactttgac
gctctgaatgacttggacagccaggtggccttggagctctgtaagacagaatgttggaca
atagaaaaagctgatattattttcctggtggacggctccacaagcataacttcggtcaag
tttaaaagcatgcagaggtttatggagtcattggtgaacctaaccacagttggagaaaaa
cggactcgctttggggtcattctctactccaccaaccccaggtccgtttttactcttaaa
gattatacatctaaacgagatgttcttcaagcaatagcagcactcaagtccccaactgga
gacacctacactagcaaagccttggcatactcgttacagttcttcgatgctgaaaatggt
ggtcgggcaaaatcaaaggtgcctcagattctcatggtgatcacagatggggatgctact
gaccgtaatgatctggttgccccgtccacggagctgcgaaaaaatgggatccaagtcttc
agtattggagtggaaggagcgcaaatggaacagttacagatcatggctggtaatgacaaa
tccagagttttctatgtggacaattttgaagcactggaaactctgcaaaagaatatttct
gaacgcctctgcaacttcaccaatccagcttgtgaaaaacagcaagctgacctggtcttc
ctaatcgatgagtctggcagcattagccaagatgattacaccatcatgaagaacttcaca
gtagatctactgaaaagcttcaaagtcggtgcagatttagtgcgtattggacttggacag
ttcagcgactcatttcgggatgagtttcacctcaaccgtttctacaccgagcaagaagtg
accaagcacgtcttgagtatggagcagaggcatggaggaaccaagattggaatggccttg
gataagatcatggaatattttgaggcgtcaaagggtggccgtagagatcaaaaaatctcc
cagaatctagtattgatcacagatggcgaatcgcaggatgacgtggaagatgcagccgac
cgtctcaggaatctggggatagaggtgtttgccatcggcattggagacgtccatgacctg
cagctactgcagatcactggctcaccgcagaggctgtttactgtgcagaactttggtagt
ttggaaaaaatcaagcaaaatgtggtcaacaccatctgcgaatccccacggagtagctgt
tccattgatatcgcagtgggatttgatatttcccaaagaaccggagctcccggtgagatg
ctgaccagcggccaccccaagctccacaaattcctgccggagatcgtccattatatttcc
tcagtaaaaggcctgtgctgcatcagccctgaatctgtcccgaccaacattgcctaccgg
ctggtggatcgtgatggactcatgatcgatgacttcaactttgaaccctacagcaaagaa
gtgttgatgaaagtcatgacgttgaatttgagggttcccacttatttcaacaccggcctg
ctgacatcctttgagcaaaagttcaaggctgaatcgggagctggagtgaaggtgctgttg
atcttctcagacggactcgacgaaagcgtggagaaactggaggatggattaaactcgctg
cgaaagtctggtgtcagcgctttgctgactgtggctttggagggagtgcgtgaccccacc
cagctgcagagggtggagtttggtcgaggattcggctacaaacttcccctgagcatcggc
atgccgagtgtcggcagcaccgtcctcaaacagattgacacggtggcagaaagggagtgc
tgcagcgtcacgtgcaaatgttcaggacacgaaggcatccgcggatctcggggccccccg
gggacaaagggtgtgaccggacagaagggttacgccggattcccaggagaggagggcgtt
gttggcgaccgggggcctcccggacccagtggacctcagggtgtcgagggatgttctggc
atcagaggactaaagggctacagaggcctccgaggaaacaggggcgaagacggagaggac
ggactggacggagtcaatggagaacagggagtgaagggaagcggcggcgctcaaggagag
aggggagacccgggaaacccaggtatcccaggtatcagaggggaggaggggctgaaagga
cagcgagggctgagaggagatccgggcgaatccggcgctgacaacactatccaaggagcc
agaggagaccccggcaacccaggtttaccgggccgacctggactggacgggcagccgggt
gagatgggagtccttggaaaccagggtccagatggaaggagagggtcgctcggcgacaag
ggtacacctggaaagcctggagctctgggtctactaggcagcccaggagcttctggtcca
cagggtcccagaggggtcagagggcaacctggactgagaggaatccccggccttcctgga
cctcagggtgaaccaggaacagctggagatccaggttcagccggacgccgtggagctaac
ggacagaagggtcaaccaggagatccaggtgttaagggtagtccaggatcactgggcgcc
agagggataccgggtcaggatggtaaagatggttatggacctccaggacctcaaggtgtc
aagggagatcctggtttccctggttatcccggcctactgggtgaggacggtctgcaggga
cccaaaggatatccaggacctgaggggaaccgaggtcgaagggggaactcgggcctttcc
ggagactcgggaatacccggagaagagggatatccgggacacagaggtcccagaggttct
cctggacacaaaagcatgactgagtgtcagctgatcacctacatcagagagaactgcgct
tgttccatcggtcaatcaaagtgcccggcctaccccaccgagctggtgtttggtctggac
atgtcagaggatgtgacccccgtcgcttttgagaggcagcgcgccgttctcctttctctg
ctggaggacatcaccatcgctgagagcaactgtccaacaggtgcccgggttgctgtggtg
gcatacagtgcccacaccaagtacctgatccgcttccacgattaccgccaaaagaaacaa
ctgatcgaatccgtgaagaatatcgccctggagaggacgtccaaccgacgccaactaggg
ggcgccatgcgctttgtgggtcagaacgtcttcaaacgtgtccgagcaggaatgatgatg
aggaaggttgcggttttcctttctaacgggccttcacaggacattaatgacattgttact
gccgtaatggagtaccaggccattaacatcgccccagccatcatctctctgaggaatgct
cctgctgttagtcgagccctggaggtcgacgacacaggaaactccgtcttcttagtgctg
gggagggacatggctgctgacctgagtaaggtcaggaactgtgtaatctgttacgacccc
tgccaccgttcagaggaatgcgccttcatccaggaacccgggcagcctcaagaggtcgat
gtggacctggtcatggtggtggacagctccagggagattcagtctgacgagtacgcgggc
atccagcagctgctgggctctgtggtggaacagctggctgtgacttcaaagccccaccga
gccggccaccaggcccgggtggctctggttcagcaggccaaggttcccaaggtggagttt
gacctgcagacctaccataaccacagtgtgatgaagaggcacatgatccagaacatgcag
caacagggcggctcatctgcactgggacacacgctggagttcaccctgaaggaggtgttc
ctgaaggccagccagccccgcaagaggagggtgctgctggccgtggtggccacccagacg
gcttcggcggacttgcacaggctgcagcacatctctaagatggcccattgtgagggagtg
gcgctgtttgtggtggccgtaggtgacggctacagccagacggaggtggtgaagctggcc
agtcagcccttacagcagcacctgatccacgtcagcagactgagggccgacgagcagggc
tacgcccagcgcttcttcagagtcttcctctctgccctcaacaagggatttaacaagtat
cctcctccaacgttaaaacagacctgcgccctgctggccggtcaacaggaaggagacata
ttcataaatggtcaggggcaggtggacctggaggagtttgaggaggaggtgcaggaggag
gtggaggagaggtttcaggagcaggtgagaggacagactcagaccgatcagccggacacc
gtcgagactctgaccagaggagacgaccagagattcgactcgggagccgatctcaacgcc
cgctgtcagctggatgctgatatcggtttccagtgtgaggactatgtccaagtatggtac
tatgacacacacatcggtgcatgctctcccttctggtatggcggctgcggcggtaacgcc
aaccgctttaacacggaaaatgaatgtttccggacatgtggcaccaataatccggacatc
ctgccgaggccagagctggtcaccgtggtctccgaagatgcctgtttccgcagccaggac
cccggcggctgccagaactacaccatgatgtggttctttgacagcgagaagaacgaatgt
tcccgcttctggtacggcggctgcggcggcaacgaaaaccgcttcaagacacaagaggag
tgcgagaacctctgtctgacaaagagttga
DBGET
integrated database retrieval system
