Xiphias gladius (swordfish): 120785815
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Entry
120785815 CDS
T07311
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03013
Nucleocytoplasmic transport
xgl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120785815 (upf3b)
03015 mRNA surveillance pathway
120785815 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xgl03019
]
120785815 (upf3b)
Messenger RNA biogenesis [BR:
xgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120785815 (upf3b)
mRNA cycle factors
P-body specific factors
120785815 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
120785815
NCBI-ProteinID:
XP_039976707
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Position
LG23:complement(11136246..11140391)
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AA seq
464 aa
AA seq
DB search
MKEDKENTRPKDKKVEIKCEDGEKTEKSKEKKETMTKIVIRRLPPSLTKEELEEQLQPLP
ELDYLEFFSNDTSLYPHLFARAYINFKNQEDIVLFRDRFDGYVFIDNRGQEYPAIVEFAP
FQKTAKKRSKKKDAKCGTITEDPDYKKFLEYYNGDEEKLTSTPETLLEEIEAKSKELVAK
KTTPLLDFLKNKQRLREEKKEERKRRELERKRLRDEERRKWREEERRKRKEAEKMKRLEK
PQEKDKDQVKEEPKIKLLKKPDRSDDADPEKPKEKAKKPEKPSKEDRSMGTADHKRRHNI
ENKEDRGRKVDDDGRKEFKERDADRDREREREKERRQKEKERIRRQDEDRRRRRERQDGE
NSCRKREDEVKKEKERALEKKKGEYIGDSTHSDRPEKPAKDNKKEEGGKRERLRNKDRPA
IQLYQPGARSRNRAAGGGGGGAESNSADKKPDTETKKVADKGDD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagacaaggaaaacactcggccgaaggataaaaaagtggaaataaagtgtgaa
gatggagaaaagacggagaagtctaaggaaaagaaagagaccatgacaaagattgtgatc
agacgattaccaccaagtctgaccaaggaggagctggaggagcagctacaaccgctgcca
gaactggactacctggagtttttctccaacgacaccagcctttaccctcacctcttcgca
agggcttacatcaatttcaaaaatcaagaggatatagtcctcttcagagatcggtttgat
ggatatgttttcatcgacaacagaggacaggagtatcctgccattgtggagtttgcaccc
tttcaaaagactgccaagaagagaagtaagaaaaaggatgcaaaatgtggaacaattact
gaagatcccgattacaagaagttcctggaatattataacggagacgaagaaaagttgaca
tcaacacctgagaccctgttggaagagattgaggcaaaatcaaaggaacttgtagctaaa
aaaacaactcctctgttggacttcctgaaaaataaacagaggctcagggaggaaaagaaa
gaagagagaaagaggagggagcttgaacgcaagcgtctgcgggatgaggagcgtcgtaag
tggagggaggaggagagaaggaagcgcaaggaggccgagaaaatgaagagacttgagaaa
ccgcaggagaaagacaaggaccaagttaaagaagaacccaaaattaagctcctgaagaag
ccagacagaagtgatgatgctgatcctgaaaaacccaaggagaaggccaagaaaccagag
aagccaagtaaagaggaccgatccatggggactgctgatcataagaggcgccataacatt
gaaaataaggaggaccgaggaaggaaagtggatgatgacgggcggaaggagttcaaggag
cgtgatgcagatcgagacagagagcgagaacgggagaaggagcggcgacagaaagagaag
gagcgcatcaggcgacaggacgaagatcggcgaagaaggagagaacggcaggatggagag
aactcatgcaggaagcgggaggacgaggtgaaaaaagaaaaagagcgtgccttggagaag
aaaaaaggtgaatatattggagactccactcactccgacaggccggagaagcctgccaaa
gacaacaagaaagaggagggtggcaaaagagagcgcctacgaaataaggatcggcctgct
attcagctgtaccagccgggggccagaagccgcaatcgagctgcaggaggaggaggagga
ggagccgaatccaactctgccgacaagaaaccagataccgagaccaaaaaagttgctgac
aaaggggacgactga
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