Xiphias gladius (swordfish): 120789938
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Entry
120789938 CDS
T07311
Symbol
shrprbck1r
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl04217
Necroptosis
xgl04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
120789938 (shrprbck1r)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120789938 (shrprbck1r)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120789938 (shrprbck1r)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
120789938 (shrprbck1r)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
120789938 (shrprbck1r)
Multi subunit Ring-finger type E3
LUBAC complex
120789938 (shrprbck1r)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
zf-RanBP
zf-RING_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
120789938
NCBI-ProteinID:
XP_039983088
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Position
LG5:complement(11026200..11040182)
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AA seq
710 aa
AA seq
DB search
MSLSSGGWTHTPAYTPDQSAALPSHYGASQSQFSCRTVLISVRVTVCHSGIRPLCLPGAG
DESLRLQLSMDPGKSGEFLLSLQDSSGTGRSVTIAEFDLRTVHYELKSPKCHELSLVAPP
HDRISFNFQCEQEAHEWATVMMSSLREAHRVAPQDNGPQHPLDGLHLQNTLALQQTEETC
TELTRAIEAGDMQSASVIAATLARQHAALKIQPFTRDYEDTEINLAVVFEDSSSSCCVTV
KVFPHMTTAALKQQMFLEYGFHPRVQRWVIGQCLCTNQRSLASYGVRQDGDTAFLYLLSA
RHARLTLQVLQQDQESALLLSPPSLSLPTTPFPSTSAKGTLSQDRRLYTTLPPRMHTSKN
IGGSESGNISKIRDLINLEMPQLSEALSLNTSSTQGWSCPSCTYINKPSRPGCEICSTNR
PENYVIPGGYRPDALELRRIQQEKEAIRQYQQAREEERRENFARLVMMDGQDLVPNPEPV
DCRICYVDLPPGEGVLLRECLHCFCRECLRSVIMLSEEPEVSCPYRDDTYSCACSLQERE
IRALVPPEEYERWLQRGLSVAESRCEGSYHCATPDCRGWCVYEDTVNVFHCPICGKHNCL
ICKSIHEGMNCKQYQDDLAVRAINDSAARRTTHLLKTLVQSGEAMHCPQCGIIVQKRDGC
DWLRCTVCHTEICWVTRGPRWGPRGPGDTSGGCRCNVNNQKCHPKCQNCH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagttcaggcggttggactcacacccctgcctacacaccggaccagtccgct
gccctccccagtcactatggggcctcgcagtcacaatttagctgccgaaccgtcttaatc
tcggttcgggtgacggtgtgccattctggtattcggccgttgtgtcttccgggagcaggt
gatgagtcactccgcctgcagctcagcatggacccggggaaatccggggaattcctgctg
tcgctccaggacagcagcgggactggccggagtgtgacaatcgctgagtttgatttgagg
acagtacactatgagttgaagtcaccaaagtgccatgagctgagtttggtagcacctcca
catgaccgcatcagctttaacttccagtgtgagcaggaggcccatgagtgggctacggtg
atgatgtcatcattaagagaagcacatagagttgcccctcaagataatggtccacagcac
cccctggatggtctccatcttcagaacacgttggccttgcaacaaacagaggaaacctgc
acagagttgacccgagccatagaagcaggtgacatgcagtctgcttctgtaattgctgcc
acgctcgcccgacaacatgctgcgctcaagattcagccctttaccagagactatgaagac
actgaaatcaatttggctgttgtatttgaagattcttcctcatcctgttgtgtcactgtt
aaagttttcccccatatgactaccgctgcactgaaacagcagatgtttctagagtatggc
tttcatccgcgggtgcagcgctgggtgattggccagtgcttgtgcaccaaccagcgttct
ctcgcttcatacggtgttcgtcaggatggcgacacagctttcttgtacctcctgtcagcc
cgtcatgctcgtttgacgctccaagtcctccagcaggaccaggagagtgcccttctcctt
agtcctccatcattgtcgctccccaccactcccttcccttctacctctgcaaaaggcacc
ttatctcaggaccggaggctatacaccactctgccccccagaatgcataccagcaagaac
attggtgggtcagagagcgggaacatcagtaagatcagagatctcatcaacctagagatg
cctcaactcagtgaagcactgagcctcaacacatcctccacccagggttggtcatgcccc
tcttgcacttacattaacaaaccatctcggccggggtgtgagatctgcagtacaaaccga
cctgagaactatgtcatcccggggggataccgacccgatgcgctggaactcaggcgcatc
cagcaggagaaggaggctatcagacagtaccagcaggcaagggaagaagagcgcagggag
aattttgctcggctggtgatgatggatggccaggatctggtgcctaacccagagcctgtg
gactgtagaatctgctacgtggacctgccgcctggagagggggtcctgcttagggagtgt
cttcactgcttctgtagagagtgtttacgctcagtcatcatgttgagtgaagagcccgag
gtgtcctgtccatacagagatgacacatattcctgtgcctgctccctgcaggagagggag
atccgagctttggtgccaccagaggagtatgagcgctggctgcagagaggtctgtcagtg
gcagagtctcgatgtgagggcagctatcactgtgccactccagactgtcgaggctggtgt
gtgtacgaggacacagtcaatgtcttccactgccccatctgtgggaaacacaactgcctg
atttgcaagtctatccatgagggaatgaactgtaagcaataccaggatgaccttgcagtc
cgtgctataaatgactctgctgcaagaaggacaacacatctactcaagactcttgtgcag
tcaggggaggcaatgcactgtccccagtgtggcattattgtgcagaagagggatggatgt
gattggctgcgctgcactgtctgtcacactgagatctgctgggtaaccagagggccccgc
tgggggcctaggggtcctggagacaccagtgggggatgtcgctgcaacgtcaacaatcag
aaatgccatcctaagtgtcaaaattgtcactga
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