Xiphias gladius (swordfish): 120798289
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Entry
120798289 CDS
T07311
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
xgl
Xiphias gladius (swordfish)
Pathway
xgl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
120798289 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xgl03400
]
120798289 (lig4)
Enzymes [BR:
xgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
120798289 (lig4)
DNA repair and recombination proteins [BR:
xgl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
120798289 (lig4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
BRCT
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
120798289
NCBI-ProteinID:
XP_039998417
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All DBs
Position
LG13:complement(11526756..11533996)
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AA seq
909 aa
AA seq
DB search
MEGTSKSDAAGQPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHSALHK
DKPKTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNEFLDSVAVNNANKEKELVKKNLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVYHPDAVELYNVNTDLNKVCQQLHNPLVSL
SEVSIGVFSAFKPMLAAAADIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSSLEGSLTPYIHKAFKSHVVNCILDGEMMAYNTTTENFMQKGSKFDIKRLI
DDSELQTCYCVFDVLLVNDQKLGKETLKKRDETIQKVFTPIKGRIHLVPKTEARTVQEVV
NALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRRNDPP
TSILCGTEKPEAYIEPCNSVILQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LADLEQFRSKASGKLVSRHLHINDNEPQKKRRLVAKPKKMVGIIDHFKPQDLSGVTKETD
MFEDVEFCILNGTEDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGLENMRVKNLILANQ
HDVVWASWLLECLNQKEVVPWQPHHMIHMSPSTREHFAKEYDSYGDSYFVDTDEQQLRGV
FGRIGSGDESVTVNVGQVEQRYSWDDLPTSMFRPFSVYMDNYADIGDPETAIPATCLDIR
ALEFRYHGGTVVQKLEEGVSHVIITEESRLLDLRTLRRNFRKKFKIVRDSWVTDSIKAGY
LMNDNSYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacttccaaaagtgatgctgctggtcagccatctgttgcagcacaggttcct
ttccttcacttgtgtaccactttagagaaaatccagaagtctaaactccgtccagataaa
tccaagatccttggtgatttcattgagtcgtggagaaagtttcattctgccctccacaaa
gacaagcccaaaacaacagactctttctacccagctatgcgcctcatagttcctcctttt
gaacgcgagcggatggcatatggtatcaaggagaacatgttagctaaactctacatcgat
gtattaggcctcccaaagaatggcccagaagccaataaactgttgaactaccgagctccg
actacatcccaaggagaagcaggagactttgctggcatggcgtactttgtgctgaagaaa
cggtgcaccagccaaggaaatctcagcatcaaagaagtcaatgaatttctggactcagtg
gctgtcaacaatgctaacaaggagaaggaacttgtgaaaaagaatcttttgcacctcatt
acccagagctcggctcttgagcagaaatggctcatcagaatgattctgaaggacatgaag
ctcggaatcagcaaagaaactgttctccaagtctatcacccggatgctgttgagctctac
aatgtcaacacagacttgaacaaggtgtgccagcagctccacaacccgttggtgtcttta
agtgaagtctccattggagtcttctctgccttcaagcccatgttggcagctgcagctgac
atccgtaatgtggagaaacagatgggcaacagccctttttacatccaaaccaagctggat
ggggagcgtattcagctgcacaaagatggagacgtgtacaaatattttagccgaaatgct
tttgaatacacacagcagtttggaggatcctcattggagggctcactgactccttacatc
cacaaagcttttaaaagccatgttgtgaactgtatcctcgacggtgagatgatggcgtac
aacacaaccacagagaacttcatgcagaaagggagcaagttcgacatcaagaggttgatc
gatgactctgagttacagacatgctactgtgtgtttgatgtgttgttagtcaatgaccag
aagcttggcaaggaaacactgaaaaagcgcgacgagaccattcagaaagttttcacccca
atcaagggaagaatacacctggtgccaaagaccgaagccaggaccgtgcaagaggtggtg
aatgccctcaatgacgccatagacaacagagaggaggggatcatggtaaaggatccttta
tccatctacaaacctgacaagcggggggagggatggctgaaaataaagccagaatatgtt
gatggcttgatggatgagcttgacctgctgattgttggcggctactgggggaaagggaga
cggggtggtatgatgtctcatttcttatgtgccgttgctgaagctccaaagcctggcgag
aaaccttcagttttccatacattatgccgcatcggctctggctacaccatgaaggaattg
tatgaccttggtttaaagctagccaagcactggaaagtctaccggagaaacgacccacca
acatccatcctgtgtggaacagagaagccagaagcctacatcgaaccctgcaattctgtc
atcctccaagtcaaggcagctgagatagtcggaagcgacatgtataaaactaactgtacc
ctgcgcttccccaggatcgagaagatccgtgatgacaaggagtggcaccagtgcatgact
cttgcagacctggagcagttccgcagcaaggcgtcggggaaactcgtctcgaggcacctt
cacatcaatgacaatgagccacaaaagaagcgcaggctggtagccaaacccaagaagatg
gtggggatcattgatcactttaagcctcaggacctctctggggttaccaaggagacagat
atgtttgaagatgtggagttctgcatcctgaatggcactgaggatcaccccaaggctgag
ttggagaagggggtggccaggtgtggaggaatcgtggtccaaaacccaggaagggacacc
tactgcgtgattgctgggttggagaacatgcgcgtgaagaacctgattttggccaaccag
catgacgtggtttgggcctcctggctgctggagtgcctgaatcagaaggaagtggtccca
tggcaaccacaccacatgatccacatgtcaccctccaccagggagcactttgccaaggag
tacgacagctacggtgacagctacttcgttgacacagatgagcaacagctgcgaggggtg
tttggccggatcggcagcggcgacgagtccgtgaccgtgaacgtcggacaggtggagcag
cgttacagctgggacgaccttcccaccagcatgttcagacccttcagcgtttacatggac
aactacgctgacataggggaccctgaaactgctatacctgccacatgtttggacatcagg
gcgctggagtttcgctaccatggtggaacagttgtgcagaagttggaggaaggagtctct
catgtcattatcacggaggaatcgagacttctggatttgaggactctgaggcgtaacttt
aggaagaagtttaaaattgtaagagactcatgggtgactgattcaatcaaagccgggtat
ctgatgaatgacaatagttacttggtttga
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