Xiphias gladius (swordfish): 120802066
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Entry
120802066 CDS
T07311
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xgl
Xiphias gladius (swordfish)
Brite
KEGG Orthology (KO) [BR:
xgl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xgl04121
]
120802066 (pdzrn4)
Enzymes [BR:
xgl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120802066 (pdzrn4)
Ubiquitin system [BR:
xgl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120802066 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
GRASP55_65
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
120802066
NCBI-ProteinID:
XP_040005444
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Position
LG2:complement(11932743..11966531)
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AA seq
820 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGRDFSKVDHDEAVVEAIRRDPIVVQVLRRTPARAT
AAVAHDHSGTPQDVCVVDVCTQTDITFEHIMALAKLRPATPPVPDICPFLLSDSCHSIHT
MEHEFYECPEYLSNTPAEVERTEEYEYEEVELCRQNSQEKLGLTLCYRTDDDEDTSIYVS
QVEPNSIAARDGRIKEGDRILQINGCEVQDRQKAVTLLSSEEARNIILLVTRPEIQLAEE
VWLDDEQQELVEELKMEILEERRKQKEHNFHRGDEHQNEEDMTTDTATCSSNNQDSGFGR
STDSPEHQPLLARLHRRSPAHCLRDRWRAEHPHTRRGTVVPQDTQSQRTLCKGQGHEGIV
SICNGGGGILGLDNHFQQLLELKCQIRNGGECGVYSIRHSIECSLTEQGGGHGDGVDSVG
GGGGVEQELRMLNEELRSIELECQNIMQAHQLRQTHQLDPSQSASCSPGRSPKDGHKRQG
RLADIHEHPERLDNDKIREKDSSSAYNTAESARSTPLGMERSPDHSLQRHISITNQKNLR
VASSTPSSPIPIPKPQSTPSRSRPADPGPIISSSPDQSNPSRSESDPALPADDERCEKKG
RTRDSRSGLDYGCSYQTTPYQGQAGSRQLQSYMHLLQQHSSLEYSQSQLSLLSVCRDPVH
RNGRPGEPRLEWKVKVRADGTRYVARRPARDRILRERALRIREERSGGMTTDDDAMSEMK
MGRYWSKEERKQHLARAREQKKRREFMQKSRLECLKEGPASGAEGRKEINILELSHKKMM
KKRNKKILDNWMTIQELMSHGARVPEGSKVHNAFLSVTTV
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcaccttgcagaaacgggaggaacactacaaactgctgtatgag
attgcacaggtgaacgggcgcgacttctccaaggtcgaccatgacgaggcagtggtggag
gccatcaggcgtgatcctattgttgtccaggttctccggcgaacccccgccagagcaacg
gcggctgttgcacatgaccacagcggcacgccacaagatgtgtgtgtcgtcgacgtttgc
acgcaaacagacatcacctttgagcacatcatggcactggccaagcttcggcccgctacc
ccccctgtccctgatatctgtcccttccttttgtctgacagctgtcattccatccataca
atggaacatgagttctatgaatgtccagagtacctgtctaacaccccagcagaggtggag
aggactgaagagtatgaatatgaggaggtggaactgtgtaggcagaacagccaggagaag
cttggcctgacactgtgctacaggaccgacgatgatgaggacactagcatctatgtcagc
caggtggagccaaacagtatagcagcgagagatgggcgcatcaaggaaggagatcgtatt
cttcagataaatggctgtgaggtgcaagacagacagaaagccgtaaccttgttgtcaagt
gaagaagcaaggaacatcatactactggtgacaagaccagaaatccagctggcagaggaa
gtatggctggatgacgagcaacaggagcttgtggaagagctgaagatggagatcctggag
gagaggaggaagcagaaggaacataactttcacagaggagatgagcatcaaaatgaagaa
gacatgacgaccgacacagctacttgttcctccaataatcaagacagtggctttgggcgg
agtacagacagtccggagcaccaacccctactggccagacttcacaggaggagcccggcc
cattgtttgagggaccgatggcgggcagagcatccacatacaagacgagggactgtagtg
ccacaggacacccagagtcaaaggacactgtgcaaaggccaaggccatgaagggatagtc
agtatttgcaatggtggaggtgggatcctaggtttagataatcacttccagcaacttctg
gagctcaagtgtcaaatccggaatggaggcgagtgtggggtatactctattcgacacagt
atagagtgtagcctcactgaacagggaggagggcatggagatggtgtggatagtgtagga
ggagggggaggggtggagcaagagttgaggatgctaaatgaggaactgcgcagcattgag
ctggagtgtcagaacatcatgcaagcacatcagctccgccagactcaccagctggacccc
tcacagtctgcatcctgctcaccaggacggagccccaaagacggacacaagcggcaaggc
aggctggccgacatccacgaacacccagagaggttggacaatgataagatcagagagaag
gacagctccagtgcctacaacacagcggagagtgcacggtcaacaccgttaggtatggag
agatctcctgaccactctctgcagagacacatcagcatcaccaaccagaaaaacctcaga
gtggcgtcttccacaccctccagccccatccctatccccaagccccagagtacacccagt
cgtagcagaccagcagacccaggccccattatctctagcagcccagaccagagcaaccct
tccaggtctgagtcagaccctgccttacctgcagatgatgagaggtgtgagaagaaaggc
aggaccagagattcaaggagtgggcttgactacgggtgttcatatcaaacaaccccttat
caaggccaagcgggatcaaggcaactccagagctacatgcatctgctacaacagcactca
tccctggagtattcccagagccagctgagtctgctcagcgtctgtcgagatcctgtgcac
aggaacggacgccctggggaaccccgtctagagtggaaggtcaaagtccgcgctgacggc
acacgctacgtggcccggaggcctgctcgtgatcgcatcctgagggagcgggcgctaagg
atccgagaggagaggagtgggggtatgaccacagatgatgatgccatgagtgagatgaag
atgggccgctactggagcaaagaggagaggaagcagcacttggcacgggccagggagcag
aagaagaggagggagttcatgcaaaagagccgcctggagtgtctaaaggagggaccagcc
agtggagctgagggcaggaaggagatcaatatcttagagctcagtcacaaaaagatgatg
aagaaacgaaacaaaaagatccttgacaactggatgaccatccaggagttgatgagccat
ggggccagagttcctgagggttctaaagtacacaacgccttcctttctgtcacaactgtc
taa
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