Xanthomonas hydrangeae: LMG31886_44350
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Entry
LMG31886_44350 CDS
T07925
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xhd
Xanthomonas hydrangeae
Pathway
xhd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LMG31886_44350 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhd03400
]
LMG31886_44350 (recB)
Enzymes [BR:
xhd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LMG31886_44350 (recB)
DNA repair and recombination proteins [BR:
xhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMG31886_44350 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAD7747738
LinkDB
All DBs
Position
LMG31886:complement(5175334..5179461)
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AA seq
1375 aa
AA seq
DB search
MSASPVTDPYLHLPLHGVRLIEASAGTGKTFTLATLFTRLVIERGLRIGQILAVTFTEAA
TQELRRRIRERLVLAATLVPDAPSPFVGAAQAATATEQAPTQAPGAPSASVGAAPAATDL
ADDPSRPGPLLQDAPDVLLTRAVLATHLATGTETPAALRRRLQQAVEEIDLAAVFTIHGF
CARVLREHALESGQAFAAPELLANDRELLGEVAADLWRQRAADAVMAEDLIALWSGGPPA
LATDLRALVRHPAILPAASDAGSDDADALLQAVHDASRALASAFYAQGTAFFESIMSAID
GGILSKVSYKPEWLASLWHWFDSFAAAPSVNAAPHPKLIKLTAAELAAGTNKKFVERTPA
SPLSHEIDGYLTAQAHVEQWRTRRRIRLLHALREDAIARLALLKRQRRVQTYDDLVDGVA
HALEGAQADALVTRLRAQYAIALVDEFQDTDDRQWAIFSNVFGEGSLARAAGLEPALFLI
GDPKQAIYGFRGGDVRTYLAAAVTAELAPPLSHNFRSRPGVLAAIDALYAQAGYTDAFLT
DGIAFHPVRPGTKRLDADLQRDGAAAPALTLWRAPEPPPPAKGKPKPWSANRARELATAA
CVAAIRGWLAGGRDGTATVNGRPVQAGDIAVLVRSHGEATRMQQALGAVGIPAVAAGKQS
LFATDEALELLALLQALLDPGDDSRLRAALATVLIGADAAAIAALAHDGERHRRWQQQAL
DWRERWQRGGPLALIGELGAAHGQRLLALTDGERRLTNYLQLAELLQEADARALGPHGLV
DWLSRRIANADDNDEAQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYIGIGRSDKGAGR
HCVVHAPELGRQLHWKTDKEDPSWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWIASGP
FHQHERTALSGMLRALDALQGAAGEGAVVVDTSTPPATLPRLPPPIEAQVPPARTPQRHI
APEWWVYSFTQLANADAGAATDPMASATVVGSGGSDEPAGSEAIAVATEVDAFDPRFAGN
RFGVVMHDVFERCDFAAWQTWRPGLPAPEGQAAAILEALQRGGYVEKEWDDGLAMLTTLI
GHTLTVMLPEGTPLAAVPAPQRRNEMEFHFAMRPTRVEALLALLHRFGVVGERQAFGARQ
RLEGLMTGLIDLTYTVDGRWYVLDYKSNRLPSYDADALARAMAHSEYELQALIYTVALHR
WLRFRLGEAYDYARDFGGVRYLFCRGLDASRNPASDPGSDPARNAAANPGSDPARGAATD
PGSDRARNAAANSGSGSDPARNAVANPGADPASDPMSETPAPGIQAASVCVAPGIHAWRF
DPALVQALDALFAGNPTEPLPSDAAAPHSPDGQEPLSPRERGWGEGTSAAEASKP
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccagcccggtcaccgacccgtatctgcacctgccgctgcatggcgtacgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccacgctgttcacccggctg
gtgattgagcgcgggctgcgcatcggccagatcctcgcagtgaccttcaccgaggccgcc
acccaggaactgcgccgccgcatccgcgagcgtctggtgctggccgcaaccctggtcccc
gacgccccatcgcctttcgtaggagcggcccaggccgcgaccgcgaccgagcaagcccca
acgcaggcacccggcgctccatctgcctctgtaggagcggccccggccgcgaccgacctc
gccgatgacccgtcgcgaccagggccgctcctacaggacgcgcccgatgtgctgcttacg
cgcgccgtcctcgccacccacctggccaccggcaccgaaacacccgcagccctgcgccgc
cgcctgcaacaggcggtggaagaaatcgacctggccgccgtgttcaccatccacggcttc
tgcgcgcgcgtgctgcgcgaacatgcgctggaaagcggccaggccttcgccgcaccggaa
ctgctcgccaacgatcgcgaactgctcggcgaagtcgccgccgacctgtggcgccaacgc
gcggctgatgcggtgatggccgaagacctgatcgcgttgtggtcgggcggcccgccggcc
ttggccaccgacctgcgcgccttggtgcggcatccggcgatcctgccggcagcttccgac
gctggcagcgacgatgccgacgcactgctgcaggccgtgcacgatgcaagccgcgcgctg
gcaagtgcgttttacgcgcagggcaccgcgtttttcgaatccatcatgtccgccatcgac
ggcggcatcctgagcaaggtcagctacaagcccgagtggctggcctcgctgtggcattgg
ttcgacagcttcgccgccgcgccatcggtcaacgccgccccgcaccccaaactgatcaag
ctgaccgctgcggaactggccgccggcaccaacaagaagttcgtcgagcgcacgccggcc
tcgccgctgagccacgagatcgacgggtatctcaccgcgcaggcgcatgtcgaacaatgg
cgcacccgtcgtcgcatccgcctgctgcacgccctgcgcgaggacgccatcgcgcgactg
gcattgctcaagcgccagcgccgcgtgcagacctacgacgacctggtcgatggcgttgcg
cacgcactggaaggcgcgcaggccgacgccctggtcacgcggctgcgcgcgcaatacgcc
atcgcgctggtggacgaattccaggacaccgacgaccgccagtgggcgatcttctccaac
gtgttcggcgaaggctcgctcgcacgcgcggccggcctggagccggcgctgtttctgatc
ggcgaccccaagcaggccatctacggcttccgtggcggcgacgtgcgcacctatctggcc
gcggccgtcactgccgaactcgccccaccgctgagccacaacttccgctcgcgccccggc
gtgctggcggccatcgacgcgttgtacgcacaggccggctacaccgacgccttcctcaca
gatggcatcgccttccacccggtgcggcccggcaccaagcggctggatgccgacctgcaa
cgcgatggcgccgccgccccggcgctgacgctgtggcgtgcgccggaaccgccgccgcct
gcgaaaggaaagcccaaaccctggagcgccaaccgcgcccgcgagctggccaccgccgcc
tgcgtggcggcgatccgcggctggctggccggtggccgcgacggcaccgccaccgtcaat
ggccgcccggtgcaggccggcgatatcgccgtgctggtacgcagccacggcgaggccacg
cgcatgcaacaggcgctgggcgcggtgggaattccggcggtcgcagccggcaagcagagc
ctgttcgccaccgacgaagcgctggagctgctggccctgctgcaggccctgctcgacccg
ggtgacgacagccgcctgcgcgccgccctggccactgtgctgatcggcgcggacgccgcc
gccatcgccgcgctcgcacacgacggcgagcgtcaccgccgctggcagcagcaggcgctg
gactggcgcgagcgctggcaacgcggcggccccctcgccctgatcggcgagctgggcgcc
gcgcacgggcaacgtctgctcgcgctgaccgatggcgaacgccgcctcaccaactacctg
cagctggccgaattgctgcaggaagccgacgcccgcgcgctcggcccgcatggcctggtc
gactggctgtcgcgccgcatcgccaatgccgacgacaacgacgaagcccagcagctgcgg
ctggaatcggacgcgcgccgcgtgcagatcgtcaccctgcacaagagcaagggcctggaa
tacccgctggtgttcctgccgtacatcggcatcggccgcagcgacaagggggctggccgc
cattgcgtggtgcatgcaccggagctcggccgccagctgcactggaagactgacaaagag
gacccaagctggagcgccgccgaagccgcctggaagcaggaacagcgcgccgaagacgca
cgtctgctctatgtcggcctgacccgcgccgagcacgcgctgtggatcgccagcggcccg
ttccaccagcacgagcgcaccgccctgtccggcatgctgcgcgcgctcgacgcgctgcag
ggcgcggccggcgagggcgcggtggtggtggacacgtccacgccgccggccaccctgccg
cggctgccgccaccaatcgaggcgcaggtgccgcccgcgcgcaccccgcagcggcatatc
gccccggagtggtgggtctacagcttcacccagctggccaatgccgatgccggcgccgcc
accgacccgatggccagtgccacggtggtgggcagcggcggcagcgacgagcccgccggc
agcgaggcgatcgccgtggccaccgaggtcgacgccttcgacccgcgctttgccggcaac
cgcttcggcgtggtgatgcacgacgtgttcgaacgctgcgacttcgccgcctggcagacc
tggcgccccggcctgcccgcacccgagggccaggccgccgccatccttgaggcgctgcaa
cgcggcggctacgtcgaaaaggaatgggacgacggcctggccatgctcactacgctgatc
ggccacaccctcaccgtgatgttgcccgaaggcacccccctggccgccgtgcccgcgccg
cagcgccgcaacgagatggaattccacttcgccatgcggcccacccgcgtcgaggcactg
ctcgcactgttgcaccggtttggcgtggtcggcgagcgccaggccttcggcgcgcgccag
cgcctggaaggcctgatgaccggcctgatcgacctcacctacaccgtggacgggcgctgg
tacgtgctcgactacaagtccaaccgcctgcccagctacgacgccgacgccctggcccgc
gccatggcgcacagcgagtacgagttgcaggcgctgatctacaccgtcgccctgcaccgc
tggctgcgcttccgcctgggcgaggcctacgactacgcccgcgatttcggcggcgtgcgc
tacctgttctgccgcggcctggacgccagccgtaacccggcatcggaccccggctccgac
cctgctcgtaacgccgcagccaacccaggctccgaccctgcccgcggcgccgcaaccgac
cccggctccgaccgcgcccgcaatgccgcagccaactccggctccggctccgatcctgcc
cgcaacgccgtcgccaaccccggcgccgatcccgccagcgaccccatgtccgagacgccc
gcacccggcatccaagcggcatccgtctgcgttgcgcccggcatccacgcctggcgcttc
gacccggccctggtccaggccctggacgccctgttcgccggcaatcccaccgagcccctg
cccagcgacgcagcagcgccccattcccccgacgggcaggagcccctctccccccgggag
aggggttggggtgagggtacgtccgccgccgaagcatccaagccatga
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