Xiphophorus hellerii (green swordtail): 116709357
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Entry
116709357 CDS
T07363
Symbol
fancm
Name
(RefSeq) LOW QUALITY PROTEIN: Fanconi anemia group M protein
KO
K10896
fanconi anemia group M protein
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
116709357 (fancm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116709357 (fancm)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
116709357 (fancm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCM-MHF_bd
DEAD
Helicase_C
ResIII
ERCC4
Motif
Other DBs
NCBI-GeneID:
116709357
NCBI-ProteinID:
XP_032403723
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All DBs
Position
19:complement(4083248..4128862)
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AA seq
1906 aa
AA seq
DB search
MSGGSNQRTLFQTWGVSVSQNKAVQSGKDVRKATGAIRTSSSRAQVAPTNPPPHQQKSPW
TVIGQNSTHTAVRQEDIIPEDEDDDDLMVVAVYEAERSLRLEKSGIIQNNHATGQSVAPF
SSPPCRKIYPDLPGFDSSSADVWIYPTNYPIRDYQLKISEASLFQNTLVCLPTGLGKTFI
ASVVMYNFYRWYPAGKIVFMAPTKPLVAQQIEACYKVMGIPQDHMAELTGSTAAKQRQEV
WKSKRVFFLTPQVMVNDLSRETCPAKEIKCVVIDEAHKALGNHAYCQVIRQLSSQTLQFR
VLALSATPGGDTKSVQSVISNLLISHIELRSEESPDIQAHSHQRSVEKVVVPLGEKLSGH
QACYLQVLERFMSRLVQNRVMGHKDLRALSKYQLILARDQFRKNPPPHIKGSHQGVLEGD
FALCISLYHGYELLIQMGLRSLFFYLQGIMDGSREMSRAKNELQRTPTFMDLYQEMETMF
LTPPDGPFIYSHPKLEKLEEVVLQHFNVWVQSSAETNDGVSTRVMIFSSFRESVQEIASM
LNRHAPLIRVMTFMGQASAGKGVKGFTQKEQLEVVHRFRQGGFNTLVSTCVGEEGLDIGE
VDLIVCFDAQKNPIRLVQRMGRTGRKRQGRIVVILTEGREERTYNQSQSNKRSVYKSITG
NRNGFRMYPSSPRMLPEGVNPQLHKIHITSGQFDHKESRRXTVRGRRSHTAGRTSLIHPQ
NLIRQESPTSDGFLSRAEYSLWSSTMRLEEHEAHPTLKLSHFMSIPSDSTPQEETSRDKP
PSRELSLWEWRHWQHKLLPFHAVDHSLRCRHFSAVMQLIDGMRDESEGECLYEQQLLPYL
QSDDADAKRQKKPKAPKNCSKTNKSKPSHSSRSELKYIDEEAEMEDAASRLIPEKQRLPD
ESDSPSHSSDDDCVIVNQTLRDPANPGDVPEVNTKNNEDDDLQEMFYLPKTYPALLSPKK
LKNQNDILVNVAELLSRSPPSPENILEAGRTLMCLPPSPELGDQPFPVRFSLEVDDDDDV
EAGIEDGEPHSPTWDEVFEDENIRYDKKEMDLKSVDDAEERVSMDADSVSDDRVHVQMDE
SLDLFEDDEAFMQMTIPDIPTPEDSITAKTTIDDEGIEKISKDEDKDCTEILNVVNKAPF
SDTRLNIQTSHNSTEDHYNKVSFLVKANPEPLDSSHDLFSVNFDLGYSLEDSEDEAEVEV
TSLSPKKQAESAVSNSSTPRRSFARLFKESKSSSQIKTDYWKSKTEELPSPVTLLGPRQM
LLSRIAEPDSSRAKQKQAEGDSLQELIHVGESSPHPAECCSDSEEEVVLLKRRHHKVNPL
SSPEVSKSLSDVDSPVVAKKKRSSVLNTTDETQAGDFLDDDFQNCSIFMRRRTTTGAKRQ
QIQQSSNKNPRGQKARQFLDEEAELSEDEEDVSSDEEDGADLNRSLEGFVVDNMHLSQGL
NDSEMHGVYLKSVRSPAVRGKFKMSYKNHQNMDIFSQVPEMDETYAEDSFVVGSDEEEEE
SNEEEPEDVELLPDVSLIDGRRQYATRRRIFLHKARAGLETNARTRPAAEQRTRTKRSRV
VCLSESSEEETEEVGKNQNPDPSGQKTVSSAVASVASKVSLLSKEQSEEQQNERXVDCRQ
RLENQHLLSDELDFAEQEATLITGLPSTSSAGQGSAPQDPVPPVTEPPPPPPPLPGSVSI
LVDSRCTGGMVELVMSLRQRHGADVHVCSLDSNYSIVSNRMAVMRQSQSDLAAMQNRKRL
AERLSNMQELFERVCLIVEKDRFKQGEVSRPFQRTRYYDNTLAALVRAGVRLLWSDGAEE
SAGLLADLAKLERRKGQGIAVPLKVKGQRREQALQMYLSLPSVSHVHALYLLHNFSCVAQ
LMNGSVESIQKGGCMSRSRAEEIYRFLRRSCDSAHFTKTPKAGKNG
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtggttcaaatcagagaactttgttccagacttggggggtttctgtgtcccag
aacaaagcggtccaatcggggaaggatgtccgaaaggctaccggggcgatccggacatcc
tccagcagagctcaggtagctccaacaaaccctcctcctcatcagcaaaaatctccatgg
acagtaattggtcagaatagcacacatacagcagtgagacaagaagacatcatccctgaa
gatgaagatgacgatgacttaatggtggtggctgtctatgaagctgaaaggagcctccgg
cttgagaagagtggcattatacaaaataaccatgcaacaggacagagtgttgctcccttt
agtagccccccctgtaggaagatatatccagatctcccaggttttgacagctcctcagct
gacgtgtggatctatcccaccaactatcctattagagactatcagctgaagatatcagag
gcttccctgttccagaacacactggtgtgtcttcctactggtttaggaaaaaccttcata
gcctctgtggttatgtacaacttctaccgctggtatccagcaggaaagattgtgttcatg
gctcccaccaaacctctggtggcccagcagatcgaggcctgttataaagtgatgggaatc
ccccaggaccacatggctgagctgacaggcagcacggcagcgaagcagaggcaggaggtg
tggaagtccaaacgcgtcttcttcctcacccctcaggtgatggtgaacgatctttctaga
gaaacctgtcctgcaaaggagatcaagtgtgtggtgatcgatgaagctcacaaggcattg
ggtaaccatgcctactgtcaggtgatcagacagctgagcagtcagacgttgcagtttcgc
gtcctggccctcagtgccactccaggaggagacacaaagtcggttcagtccgtgatttcc
aatttgctgatttcacacatcgagttgcggtcagaggagagcccggacatccaggctcat
tcccaccagcggagtgtggagaaagtggtggttcctctgggggagaaactttcaggccac
caggcttgctacctccaggttctggaaaggttcatgtcccgtttggttcagaaccgagtg
atgggccacaaggacctgcgggcgctcagcaagtaccagctcattctcgccagggatcag
ttccgcaagaacccgccgccgcacatcaagggttctcaccagggagtgctggagggcgac
tttgccctttgcatcagcctgtaccacggctacgagctgctgatccagatggggctccgg
tcgcttttcttctacctacagggaatcatggacggatccagagaaatgtccagagctaag
aatgaattgcagaggactccgacgttcatggatctgtaccaggagatggagacgatgttc
ctgacaccaccagacggtccattcatttacagccatcccaaactggaaaaactggaggag
gtggtgttgcagcactttaacgtgtgggttcagagctcagcagagactaatgatggagta
agcacacgtgtgatgatcttctcctcttttcgggaaagcgtccaggagatcgctagcatg
ctaaaccgacacgcaccactgataagggtcatgacctttatgggccaagcctctgctggg
aaaggcgtcaaaggcttcacccaaaaggagcaactggaggtggtccacaggttccggcag
gggggctttaacactctggtttctacctgtgtgggggaagaagggctggatatcggtgag
gtggacctcatcgtgtgcttcgacgctcagaagaatcccatccgcctggtgcagcgaatg
ggacgtaccggccgcaaacgacagggacgcatcgttgtcatcctgacagagggacgggag
gagaggacctacaatcagagtcaaagcaacaagcgcagcgtgtacaagtccatcaccggc
aacagaaacgggttccgcatgtatcccagcagcccccgcatgctgcctgagggcgtgaat
ccccagctgcataaaatacacatcacctcaggccagtttgaccacaaagagagcaggagg
nntacagtcagaggtcgaaggtcccacactgcgggacggacttcactcatccaccctcag
aacctcattcgacaggagagtcccacatcagacggctttctgagcagagcagaatattct
ctgtggtcgtcgaccatgaggctggaagaacacgaggctcatccaactctgaagctgtcc
cacttcatgtccattcccagtgactcaacacctcaggaggagacttccagggacaaacca
ccatccagagagctgtctttgtgggaatggagacactggcagcacaaactgcttcctttc
catgcggttgatcattccctccgctgccgccacttctctgcagtgatgcagctcatagac
ggcatgagagatgagagtgagggggagtgtctttacgaacagcagcttcttccttacctc
cagagtgatgatgctgatgcaaagaggcagaagaaaccaaaagccccaaagaattgctct
aaaaccaataagagcaaaccgtctcactcatcccggtccgaactgaaatatatcgacgag
gaagcagagatggaggatgcagcatcgcgattgatcccagagaaacagaggctcccagat
gaatccgattctccgtcacacagctctgatgacgactgcgtcatcgttaaccaaaccctc
agagatcctgcaaatccaggcgatgttccagaagttaatacaaaaaataatgaagacgat
gatcttcaagagatgttctaccttcctaaaacatatcccgcactgctgtcgccaaaaaaa
ctcaagaaccagaacgacattcttgttaacgtagctgagcttctctctcgatctccacct
tcgccggagaacattttagaagctggaaggactttgatgtgtcttccaccttcacccgag
ctgggcgatcaacctttccccgtcaggttcagcttggaagtggacgatgacgacgatgta
gaggctggcattgaggacggcgagcctcatagtcccacctgggatgaggttttcgaggat
gaaaatatcagatacgacaagaaggaaatggacttaaaaagtgttgacgatgcagaggag
cgcgtttccatggatgctgattctgtgagtgacgacagagttcatgtccagatggatgag
agcctggacttgtttgaagacgatgaggcgttcatgcaaatgacaattccagatattcct
actcctgaggatagcattacagccaaaacaaccatcgatgatgaaggcattgagaagatt
tccaaagatgaagacaaagattgcacagaaatattaaacgttgtaaacaaagcccctttc
tcagacacaaggctaaacattcaaaccagccacaactcaacagaagatcactacaacaaa
gtttcgtttttagtgaaagcaaatcctgagccactagattcctctcatgatctgttctct
gttaattttgatctcggttattcgctggaagactctgaggatgaagcagaagtggaagtt
acatcgctgtcgcctaaaaaacaagccgagtcagctgtttctaactcctctactcctcgt
cgcagctttgccagactcttcaaagagtccaagtcatcttcacaaattaaaacggattat
tggaagtctaaaactgaggaactcccatctccagttacattactgggacccagacagatg
ctcctgtctaggatcgcagaaccggactcttctagagccaagcaaaaacaagctgaaggt
gattcactgcaagaactgatccatgtgggagagtcttctcctcatccagcagagtgttgc
agcgacagcgaagaggaagtcgtgcttctcaaaagaagacatcacaaggtcaaccccttg
tcctccccagaagtgtctaagagcctgagtgatgtggactcacctgtggtggcaaagaag
aaacgttcttctgtactgaatacgactgacgaaactcaagctggagattttttggatgat
gatttccagaactgctccatcttcatgcgaagaagaacaacaactggagccaagaggcaa
caaatccagcagtccagcaacaagaaccccagaggtcagaaagcacgtcagtttctggat
gaagaggcagagttgtcagaagatgaagaggatgtttcgtctgacgaagaggacggagca
gatctgaatcggtccctggaaggcttcgttgtggacaacatgcacctttcccagggactg
aatgactcagagatgcatggagtttacttgaagtctgtgagaagccctgcagtccgggga
aaattcaaaatgtcttataaaaaccatcaaaacatggatattttttctcaggtgcctgag
atggatgagacgtatgcagaggacagctttgtggttggcagtgatgaagaggaggaggag
agtaacgaggaagagcctgaagacgtcgaacttctgcccgacgtgtcgctcattgatggg
agacggcagtacgcaaccagacggcgcattttcctgcacaaagccagagcgggactcgaa
accaatgccagaactcgacccgctgcagagcaaagaaccagaaccaaacgctcgcgggtc
gtctgcctgagcgagtccagcgaagaggagacggaggaagtgggcaaaaatcagaatcca
gatcccagcgggcagaaaacggtgtcctctgctgttgctagcgtagcatctaaagtctca
ttattgagtaaagaacagagtgaagagcagcaaaatgaaaggtaagtagactgtcgtcag
aggttagagaatcaacatctgctctcggatgagctcgacttcgcggagcaagaggcgact
ttaataacaggacttccttccacgtcctcagcgggtcaggggtccgctcctcaggatccg
gttccgccggtgaccgagccgccgccgccgccgccgcctctccccgggtcggtcagcatc
ctggtggacagccgctgcaccggcggcatggtggagctggtgatgagtctgcgtcagcgc
cacggggctgacgtccacgtctgctcgctggacagcaactactccatcgtgagcaaccgc
atggcggtgatgaggcagagccaatcggatttggccgcgatgcagaaccggaagcgactg
gcggagagattgagcaacatgcaggagttgtttgagagagtgtgtctgatagtggagaaa
gatcggttcaagcagggtgaagtttcccgccctttccagcgaacccgttactatgacaac
actttagcggccctggtcagggccggggttcgcctgctgtggagcgacggcgccgaggag
agcgctgggttgttggcggacctggccaagctggagcggcgtaaaggtcagggcatcgcg
gtgcccctgaaggtcaaaggtcagcgcagggagcaggcactgcagatgtacctgagtctg
ccttcggtcagccatgttcacgctctctacctgctgcacaacttcagctgcgtcgcacag
ctgatgaacggctccgttgagtcgatccagaaaggcggctgcatgagccgatccagagcc
gaggagatctaccgcttcctgcgtcgctcctgtgactccgcccacttcaccaaaacaccc
aaagctggaaaaaacggctag
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