Xiphophorus hellerii (green swordtail): 116710211
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Entry
116710211 CDS
T07363
Symbol
usp4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4 isoform X1
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xhe01002
]
116710211 (usp4)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116710211 (usp4)
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116710211 (usp4)
Peptidases and inhibitors [BR:
xhe01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
116710211 (usp4)
Ubiquitin system [BR:
xhe04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116710211 (usp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Ubiquitin_3
DUSP
UCH_1
USP7_C2
USP7_ICP0_bdg
Choline_bind_1
Motif
Other DBs
NCBI-GeneID:
116710211
NCBI-ProteinID:
XP_032404995
LinkDB
All DBs
Position
20:complement(18462908..18475560)
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AA seq
1002 aa
AA seq
DB search
MMAEGGGPESGSAADSDTEPVAAQIPTPSIENQKQSIGSLLKTTLKKGDEWYLIDSRWFK
QWKKYVGYDSWDMYNVGERSLYPGPIDNSGLFSDQETQALKEHLIDELDYVLVPTEAWNK
LVSWYSCLEGQRPIVRKVVEHGMFVKHCKVEVYLLELSLCENDNMENVITRHFSKADTID
TIEKEMRTLFNIPSEKETRLWNKYMSNTYEQLNKPDSTVQDAGLFQGQVLVIERKNEDGT
WPRQASHPKSSATPSRNFTTSPKLSSNSSASVSPTVTNGDSSGSPGYALNNSTSSNNRFG
GYNSYSSSYNYRESQSQPGLCGLSNLGNTCFMNSALQCLSNVSPLTEYFLTDQYEAEINR
ENPLGMRGEIAEAYADLVKQMWMSRSSYVAPRTFKTQVGRFAPQFSGYQQQDSQELLAFL
LDGLHEDLNRVKKKPYLALRDAEGRPDDIVAKEAWTNHRLRNDSVIVDIFHGLFKSTLVC
PECSKVSVTFDPFCYLTLPLPMKKDRTMEVFLVQSDPQSKPTQFRVVVPKLGAVTDLCSA
LSRLCGIPSEKMVVADVYNHRFHKIYRRDDALNQIMEKDDIFVYEVQEEDSERMNLPVYF
RERHSKHVGSSSSTLLFGQPLLISVPRHNLLADVLYDKILERIGRYVKQQHSPNSESRAS
ASATLSSSSQTPECSTSSTLNASLGGCGSPQSDGASCSASSSNGSNHSGTCNEANGLYDG
EEEAMDHQVSPEPENGPSEEEEESSDLENGSKGNAAKLFTFSIVNSYGTVNISPLPCDGN
VLKLNPHSTVAIDWDTESKKQFYDEQEAEVYEKHDSMLQPQKKKTTVALKECIELFTTME
TLGEHDPWYCPTCKKHQQATKKFDLWSLPRILVVHLKRFSYNRCWRDKLDTLVDFPIRDL
NMSEFVCDPKAGPYVYDLIAVSNHYGGMGGGHYTAYGKNKMDGKWYYFDDSSVSSASEDQ
IVTKAAYVLFYQRRDEDSPSKPDPPASLGGATESGDDHMDTN
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgatggctgagggaggcggacccgagtcgggcagcgcggcagactctgacacagagccg
gtagccgcacagattcctaccccttcaatagaaaaccaaaaacagagtattgggtcactt
ttgaaaacaactttaaaaaagggcgacgaatggtatcttatagacagtcgatggttcaaa
cagtggaaaaagtatgtgggatatgacagttgggatatgtacaatgttggggaacgtagc
ctctatccaggaccaattgacaactctggcctgttctcagaccaggagactcaggccctg
aaagagcaccttatagatgagttggactacgtcctcgtacccactgaggcatggaataag
ctggtcagctggtacagctgcctcgagggccagagacccatcgtcagaaaggtggttgaa
catggcatgtttgtgaagcactgtaaggtggaagtttatctgcttgaactcagcctatgt
gagaatgacaacatggaaaatgtcatcacacggcatttcagtaaagctgataccatagac
actatagagaaggagatgcggacgttgttcaatatcccttcagagaaggagactcgactc
tggaacaaatacatgagcaacacttatgagcaactgaacaagccagacagcactgtacag
gatgccggtctcttccagggacaggtgcttgtgattgaacgcaagaatgaggacggcacg
tggcccagacaagcttcgcaccccaagtccagtgcaactccatctaggaattttactacc
tcccctaaactttcctcaaattcatcagctagtgtatccccaacagtaaccaatggtgac
agtagcgggagccccggatatgctctgaataacagcacgtcctccaacaacagatttggg
ggatataattcatatagctcctcctataactacagagaatcacaatcgcagcctggcctg
tgcggtctcagtaatctgggcaatacatgcttcatgaactctgctctccagtgcctgagc
aatgtgtctccactcacagagtacttcctcacagaccagtatgaagcggagattaaccga
gagaatcccctgggaatgaggggagagatcgccgaggcctacgcagacctggtgaagcag
atgtggatgagccgcagcagttacgtggccccgcgtaccttcaaaacccaggtgggccgc
ttcgctccacagttttccggctaccagcagcaggactctcaggagttgttggccttcctg
ctggatggactccatgaagatctgaaccgtgtcaagaaaaagccttacctggccttgaga
gacgcagagggtcgtccagatgatattgttgccaaggaagcctggacaaaccaccgtttg
cgcaacgactccgtcatcgtcgacattttccacggcctctttaagtccacattagtgtgt
ccagagtgttccaaagtgtctgtgaccttcgaccctttctgctacctcacgctgcctctc
cctatgaaaaaggaccggaccatggaggtgtttttagttcagtcggacccccagtccaaa
cccactcagttcagagtggtggtccccaaactgggagcagtgacggacctttgcagcgcc
ttgtccaggctctgtgggattccttctgagaagatggtggtagccgacgtttacaatcac
agatttcacaaaatttacagacgagatgatgccctcaaccaaattatggaaaaagatgac
atttttgtatatgaggtccaggaggaggacagcgaaaggatgaacctgcctgtgtatttc
agggagcgccactccaagcacgtggggagctcctctagcaccttgttgttcggccaacct
ttactcatctccgtgcccagacacaacctgttagctgacgttctttacgacaagatcctg
gaaaggatcggacgctacgtcaagcaacagcacagtccaaatagtgaaagcagagcttca
gcctccgccactttgtccagctccagccagactcctgaatgttccacatcgtctaccctc
aatgccagcctggggggctgcggcagcccccagtcggatggggcctcctgcagcgccagc
tccagtaatggtagcaaccactcaggaacctgcaatgaagctaatgggctgtatgacggt
gaagaggaggccatggatcaccaggtgagtcctgagccagagaacgggccgtctgaagaa
gaggaggagagctcagacttggagaacggctctaaaggaaacgcagctaagctcttcacc
ttcagcatagtcaactcttatggaaccgtcaacatcagcccgctgccttgcgatggaaat
gtcctcaaacttaacccacattccactgtggcgatcgactgggacacggaatcaaagaaa
cagttttatgatgagcaggaagcggaggtctatgagaagcacgacagcatgctgcagcct
caaaaaaagaaaacaaccgtggctctgaaggaatgcatcgagctttttactacaatggag
actctaggagaacatgacccttggtattgtccaacatgtaaaaaacatcaacaggcaaca
aaaaagtttgacttatggtcgctgcctcgcattctggttgttcacctgaagcgtttctcc
tacaaccgatgctggagggacaagctcgacacactggtggactttcccatcagggatcta
aacatgtcggagtttgtgtgtgacccaaaagcgggcccttacgtctacgacctcattgct
gtttcaaaccactatggaggaatgggaggcggtcactatacggcttatggcaagaataaa
atggatgggaagtggtattactttgatgacagcagcgtctcgtctgcctctgaagatcag
attgtgactaaagcagcctacgtgctcttctatcagcgcagagacgaggacagcccctcc
aaacccgacccaccggcctcgctgggaggagccaccgagtcaggcgacgaccacatggac
acaaactga
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