Xiphophorus hellerii (green swordtail): 116716218
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Entry
116716218 CDS
T07363
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
116716218 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116716218 (lig4)
Enzymes [BR:
xhe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116716218 (lig4)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
116716218 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
116716218
NCBI-ProteinID:
XP_032413011
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All DBs
Position
24:complement(11578779..11583831)
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AA seq
909 aa
AA seq
DB search
MMEGTSKNGAAAAEPSVAAQVPFLHLCTTLEKIQKSKLRPDKSKILGDFIESWRKFHAAL
HKDNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEASKLLNYR
APTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLH
LITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLKKVCQQLHDPSV
SLSEVSIELFSAFKPMLAAVANIRNVEKQMGNSPFYLQTKLDGERIQLHKDGDVYKYFSR
NAFEYTQQFGGSPLEGSLTPYIHNVFKSNVVNCILDGEMMAFNPTAGTFMQKGNKFDIKR
LMDDSELQTCFCVFDVLLVNNQKLGKEPLKKRYEFLQTVFTPVKGRIHVVPKTEVGTMQD
VVSALNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGK
GRRGGMMSHFLCAIAEAAKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKND
PPASILCGVEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIREDKEWHQC
MTLAELDQFRSKASGKLASRHLHIDGDEPQKKKRKLPVKPKKVVGVIDHFKPQDLSGVSK
ETDMFEDVEFCILNGTEGHPKSELEKGVARCGGIVVQNPGRDTYCVVAGVENMRVKNLIS
SNQHDVVWASWLLECLDQKEVVPWQPRHMIHMSPSTREHFAKEYDSYGDSYFVDTDEEQL
REVFSRIDGEQAAMASVGAAQVEERYGWDDLPTSMFRPFTFYFHILDPKSATGATCLDIR
ALEVRYHGGTVAKALEEGVSHVVVEEETRLLELRTLRRRFRKKFKIVKDSWVTDSITAGH
PMDDADYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgatggagggaacttccaaaaatggagcggctgctgcagagcccagcgttgctgctcag
gttcctttccttcacttgtgcacaactttagagaaaatccagaagtccaaactccgtcca
gataaatccaagatccttggggatttcattgaatcatggcggaaatttcatgccgccctc
cacaaggacaatccgaaaactacagactccttctaccctgctatgcgcctcatcgtcccg
ccttttgagcgagagcgaatggcctatggcatcaaagagagcatgctagctaagctctac
atcgatgttttaggcctcccaaagaatggcccagaagccagtaagctcctgaactaccgt
gctccgactacatcccaaggagaagcaggggatttcgccggcatggcatactttgtgctg
aagaagcgatgtaccagccaaggaaacctcagtatcaaagaggtcaatgactttcttgac
tcagtggccatcaacaatgccagcaagcagaaggatcaggtgaaaaagagcctgctgcac
ctcatcactcagagctctgctctggagcaaaagtggcttattaggatgattctgaaggac
atgaagcttggagtcagcaaggaaactgttctccaggtcttccacccggacgctgcagag
ctctacaatgtcaacacagacttaaagaaggtgtgccagcagctgcacgacccctctgtg
tctttaagcgaagtctcaattgaactcttctctgccttcaagccaatgttggcagcggtg
gccaacatccgcaacgtcgagaagcagatggggaacagccccttttaccttcagacgaaa
ctggatggggagcggattcagcttcacaaggatggagacgtgtacaagtacttcagccgg
aacgcatttgaatacacgcagcagttcggaggatcgccgctcgagggatcactcactcct
tacatccacaacgtgttcaaaagcaacgttgtaaactgcatcctggatggcgagatgatg
gcattcaacccgacggcggggaccttcatgcagaaagggaacaaatttgacattaagaga
ctgatggacgactctgagctgcagacgtgcttctgcgtctttgacgtgttgctggttaat
aaccaaaaacttggcaaagaaccgctgaagaagcgatatgagtttctccagacggtcttc
acccccgtcaagggtcggatacatgtggtgccaaagacagaagtcggaacaatgcaagat
gttgtcagcgctcttaacgatgccattgacaacagggaagaagggattatggtgaaggac
cctttgtccatctacaaacctgataaacgaggggagggttggctgaaaataaagccggag
tatgtggacggcttgatggatgagctggacctgctgattgttggtggttactgggggaaa
ggaagacggggcgggatgatgtcccactttctatgtgctattgcagaagcggcaaagcct
ggtgagaagccgtcggttttccactccttctgccgaattggctcgggttacaccatgaaa
gagttgtatgaccttgggttgaagcttgcgaagcattggaaagtctaccggaaaaacgac
ccgccggcatccatcctctgtggagtggagaaaccggaagtgtacatcgaaccctgcaac
tcagtcatcatccaggtcaaagcggccgagatagtcggaagcgacatgtacaagaccaac
tgcaccctgcggttccccagaatcgaaaagatccgcgaggacaaagagtggcaccagtgc
atgactctggcagagctggatcagttccgcagcaaggcgtccgggaaactggcctcgcgg
caccttcacatcgacggcgacgaaccacagaagaagaagcggaagctgcctgtcaaacca
aagaaggtggttggcgtcattgaccacttcaagccccaggatctgtccggagtttccaag
gagacggacatgtttgaggatgtggagttctgcatcctgaacggcactgaaggtcaccca
aagtcagagctggagaagggcgtggccaggtgtggcggcattgtggtccagaacccggga
cgggacacttactgcgtggttgccggcgtggagaacatgcgcgtgaagaacctgatttcc
tccaatcagcacgacgtggtctgggcgtcatggctgctggagtgcctggatcagaaggaa
gtggtgccatggcaaccgcgccacatgatccacatgtcgccctcgaccagggaacacttc
gccaaggagtatgacagctacggcgacagctactttgtcgatacggatgaggagcagctg
agggaagtgttcagcaggatcgacggggagcaggcggcgatggcgtctgtcggcgccgcg
caggtggaggagcgttacggctgggacgaccttcccaccagcatgttcagacccttcacc
ttttacttccacatcttggatccgaaaagcgcaacaggtgctacctgtctggacatcagg
gcgctggaggttcgataccacggaggaacggtggcgaaggcgctggaggaaggagtttct
cacgtcgttgtcgaggaagagacgagactcctggagctgaggacgctgaggcgccgcttc
aggaagaagtttaagatcgttaaagactcgtgggtgaccgactccattacggcagggcat
ccgatggacgatgctgactacctggtttga
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