Xiphophorus hellerii (green swordtail): 116718358
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Entry
116718358 CDS
T07363
Symbol
usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
xhe01002
]
116718358 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116718358 (usp47)
Enzymes [BR:
xhe01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116718358 (usp47)
Peptidases and inhibitors [BR:
xhe01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
116718358 (usp47)
Ubiquitin system [BR:
xhe04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116718358 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
116718358
NCBI-ProteinID:
XP_032416113
LinkDB
All DBs
Position
4:17457277..17482666
Genome browser
AA seq
1355 aa
AA seq
DB search
MEMVPSEENQFVPKEIHNAAEEPRVLCIIQDTTRARTVNERLTLNLPASTTLSKLYEDVA
HKAGYVNGSFDLTWGNTQNMAPLEHNSEMSLSDSSFEPDGKKNFLQLADKDGEQPQIASD
ESGTADSSGLDDSSQERFIGPLQRDGSAGGSGDYSPSYSYSSILSKSETGYVGLVNQAMT
CYLNSLLQTLFMTPEFRNALYNWEFEESEEDPVTSIPFQLQRLFVLLQTSKKRAIETTDV
TRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVRCLECGY
ESWRIDTYLDIPLVIRPFGASQAYGSVEEALQAFIQPETLDGANQYFCERCKKKCDARKG
LRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSPFIDVEDEKSPQTESCTD
SGAENEGSCHSDQMSNDFSTDDCVDEGICLDSTSSTERALKPKSLLTFELFSVMVHSGSA
AGGHYYAYIKSFSDGQWYSFNDQHVSKITQDDIRKTYGGSSGSRGYYSSAFASSTNAYML
IYRLKDPSRNSRFLAVEDFPEHIKSLVQKEKESEEQEKRQREIERNTCKIKLFCVHPLKM
MMESKLEVHKDKTLREATEMAYKLMELEGVVTLDCCRLVKYDEFHEYLERSYEGEEDTPM
GLLLGGVKSSYMFDLLLETRRSDQVFQPYKPGEVMVKVHIVDLKTETIALPISVRAYLNQ
SITEFKQLIAQATGLSAETMRVVLERCYNDLRLLNVPNKTLKAEGFFRSNKVFVESSVLT
DHQVPFTDSLLWKLLDRHGNTIRLLVLLPEQSPGTLASRTLCQKAGEDSDGLFEGSKGNR
KSVEAILEESTEKLKNLSLQQQQGSSASDSQKSSDTSDFEHIESPTQEADSNSSLCVAAD
SRELENRISGSSDTENQFVCEERSDSEVNNDRSTSSVDSDILSSSHSSDTLCNADSGPIQ
LANGLDSHSITSSRRSKAHEGKKETWDTAEEDSGTDSEYDDNGKSKAEAQYLYFRAEPYS
QDDSSWDTHKCLVVHVDKRITLASFKQNLEPYVGVPSSQFKVFRVYANNQEFESVRLNET
LSSFSDDNKITIRLGRALKKGEYRVKVFQLLVNEPEPCKFLVDTVFAKGMTVRQSKEELL
PQLKEQCKLDLSIDRVRLRKKTWKNPGTVFLDYHVYEEDISISSNWEVFLEVLDDSEKMK
SMSQLAILTRKWNPATMKLGPFQEAILESSSVEELKEKLSEMSDIPLENLEFAKGRGTFP
CDISVLEIHQDLDWNPKVSTLNVWPLYICDDGAVVFYRDSRDEPLELSEDERNELMKKES
SRLLKTGHRVSYSPRKEKALKIYLDGGPVRDPGQD
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcccagcgaggagaaccagttcgtacccaaagagatacataatgcagct
gaggagcccagagtgctgtgcataattcaggacacgaccagggcgaggacggtcaacgag
aggctgaccctcaacctgcccgcttccaccactctctccaaactttacgaggacgttgcc
cataaagccggatatgtgaatggctcttttgacctcacctgggggaatactcagaacatg
gcaccactggagcataacagtgagatgtccctctctgattctagctttgagcctgacggt
aagaagaattttctccagcttgcagataaagatggagagcaaccacagattgcatcggat
gagtcaggaacagcagatagcagtgggctggatgacagttcccaggagcggtttatcggc
cccctgcaaagagacggcagcgcgggcggcagcggtgactacagtccatcgtactcctac
tcatccatcctcagcaaatctgagacaggttatgttggtttggttaaccaagcaatgacc
tgctatttgaacagtcttctccaaacactgtttatgactcctgagttcagaaatgcactc
tacaattgggagtttgaggaatctgaggaggatcccgtcaccagtatccccttccagctg
caaaggctctttgttctgcttcagaccagtaagaaacgggcgattgagacaactgatgta
actaggagcttcgggtgggatagcagtgaggcctggcagcagcatgacgtccaggagctg
tgcagggtcatgttcgatgccctggagcagaagtggaagcagacagaacaggctgatctg
atcaaccagctgtaccagggaaagctgaaggattatgtgcgttgtttagagtgtggatat
gaaagctggagaatcgacacttacctggacatccctcttgtgatcagaccctttggagcc
agtcaggcctacggaagtgtggaagaagctttgcaggcattcatccagccagaaaccttg
gacggcgccaaccagtacttttgtgagcgctgcaaaaagaaatgtgatgcccgaaagggt
ctgaggtttctccacttcccctacctgctgacgctgcagctgaaaaggtttgattttgac
tacaccactatgcatcgcatcaagcttaacgaccgcatgactttccccgaggagctcgac
atgagcccgttcatcgatgtggaagacgagaagtcgcctcagacagagagctgcactgat
agcggagcagagaatgaaggcagttgccacagtgaccaaatgagcaatgatttttccact
gatgactgtgtggatgagggcatctgcttggacagcaccagtagcacagaaagggcattg
aagccaaagagcttgctgacctttgagttgttctccgtcatggtccattcgggcagcgct
gcgggcggacactactacgcctacatcaagtccttcagtgatggccagtggtacagtttc
aatgatcagcatgttagcaagatcacccaggatgatatcaggaagacatatggggggtcc
tcagggagcagaggctattattccagtgcctttgcaagttccacaaacgcttacatgctg
atttatagattgaaagacccctcaaggaattcaaggtttttagctgtggaagatttccca
gagcacataaagagtttggttcagaaggagaaggaatccgaagagcaagagaagcgccag
agagaaatcgaacgaaacacttgcaagatcaagctcttctgtgtgcatcctctcaaaatg
atgatggagagcaagttggaggttcataaagataaaactctcagagaagcaacagaaatg
gcctacaagctgatggagctggaaggagttgtgactctggactgctgtcgcttggtaaag
tatgatgagttccatgagtatctggagcggtcgtacgaaggcgaggaagacacccccatg
gggctcctgcttggaggcgtcaagtcctcgtacatgttcgatttgctccttgagactcgc
cggtctgatcaggtcttccagccttataaacctggagaggtgatggtgaaggtccatatt
gttgatctgaagactgaaaccatcgcccttccaatcagcgtgcgagcgtacctgaaccag
tctatcactgaattcaagcagctcatagcacaggctacaggtctgtctgcagaaacgatg
cgtgtggtcttggagcgatgctataacgacctcaggctgctcaacgtcccaaacaagacg
ctaaaagccgagggtttcttcaggagtaacaaggtttttgtggagagctccgtgttgact
gatcatcaggttccttttaccgactcgctcttgtggaaactgttggatcgccacgggaac
acgatccgcctgcttgtcttgctgcctgagcaatctcctggcaccctggccagcagaact
ctttgtcaaaaagcaggagaagactctgacggtctcttcgaagggtcgaagggcaacagg
aaatctgtggaagcgatactggaggagagcacggagaaattaaagaacctgtctctgcag
cagcagcagggctccagcgccagcgacagccagaaaagttccgacaccagcgactttgaa
cacatcgagtcgccgacacaggaggcggactcgaactcttcgctgtgcgtggcggcagac
agcagggagctggagaaccggatatccgggtcctctgacacggagaaccagtttgtctgc
gaggagcgttcagactctgaggtgaacaatgaccgtagcacaagctcagtggacagcgac
atcctgagctccagtcacagcagcgacacgctgtgcaacgcggacagcggccccatccag
ctggccaacggcctggattcacacagtatcaccagcagccgacgctccaaagcccatgag
ggcaaaaaggagacctgggatactgctgaggaagactctgggacagacagcgagtatgac
gacaacgggaagagcaaggcagaagctcagtacctgtacttcagagcagagccttactcc
caggatgactcttcatgggatacacacaaatgtttagtggttcacgtggacaagagaata
actttggcatcattcaagcagaacctggaaccctacgttggagtcccgtcgtcccagttc
aaggtgtttcgagtttacgccaacaaccaggagtttgagagcgtacggctcaacgaaacg
ctctcatcgttctccgacgacaacaagataaccattcgactgggaagagcattaaaaaag
ggtgaatacagagtcaaagtgtttcagctgctcgtgaatgaaccagagccttgcaagttt
ttagtggacacggtctttgctaagggcatgactgtaagacagtccaaagaggagctgctt
cctcagttaaaagagcagtgcaagctcgacctcagcatcgacagggttcgtctcaggaaa
aagacgtggaagaatccaggaacggtgtttttggattaccacgtttacgaggaagacatc
agcatttcctcaaactgggaggttttcctggaagtcttggacgactcggagaagatgaag
tccatgtcgcagctggccattttgacccggaagtggaacccagctactatgaagctggga
cctttccaggaagcgattctggagagcagcagtgtggaagaactaaaggaaaagctcagt
gaaatgagtgatattcccctggagaacttggaatttgcaaagggcagaggaacgtttcca
tgtgatatatccgtgttggaaatccatcaggatttggactggaacccaaaagtttcgact
ctgaatgtgtggcctctgtacatctgtgacgacggagccgtggtcttctacagggacagc
agagacgaacctctggagctgtcggaggacgagcgcaacgagctgatgaagaaggaaagc
agccgcctgctgaagacgggacaccgcgtcagctactcgccacgcaaagagaaggcccta
aagatctacctggacggcggccccgtgagggacccggggcaggactga
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