Xiphophorus hellerii (green swordtail): 116718991
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Entry
116718991 CDS
T07363
Name
(RefSeq) LIM domain only protein 7-like isoform X1
KO
K06084
F-box protein 20
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
116718991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116718991
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
116718991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CH
DUF4757
PDZ_6
LIM
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
116718991
NCBI-ProteinID:
XP_032417202
LinkDB
All DBs
Position
4:complement(20785688..20809403)
Genome browser
AA seq
1311 aa
AA seq
DB search
MEWRQQSSVSCKDAFTEARRWIEEVTGKSFGCSDFRSALENGVLLCDLINQLKPGIIKRM
NRLSTPIAGLDNVNVFLKACGKLGLNESQLFHPGDLQDLSTRVTLRRDESQRRLKNVLIT
IYWLGRKAQFDTYYSGPQLNFKAFEGLLGLALSKALEEGSNTSVKDGVYKECHYSEGEQS
LQTRQNYDRGNSVDGFECVDPQAVRLNEEGFESDAEAEQVYKMDSTKVSAHLDKGHIPPP
LRRKQEREESMVGQIPRAYQTQIRPETPVQVNPGWIWSKSLSDIPMVYPARKVSNGNAIS
DKGQDTSLPRDWNLEIERKYSIGARDSEAQWQDDLTRWKNRRKSSKPELYRRSFERDHVF
NHLTNGTVTNSDGNEAPGGPIKRDQSPWRHSSSPRPYSVSPSKPLSSDLRPHTKVILTRS
YTTEAAFSSQSHSRESQLGGKPESGGSIRGEETYFASLAADGRDRVTTPSLYQTFTTQTQ
VKSLGNQFTFPSTSEQTQPECVLPYQNSSLAKFTKPGLFDSKESTRSCNAALYKHSFSTE
PKGRICSPDVAGESGVTVTEDLTNRIKKSQETPKIIDSAEDGVTCQQESAGVSKYLSRST
TWSSSASLPRGYRRSEGSTRLSSAITARPFGTKPSRHSLPRQSNVDGQSLMSNTEDSHSS
FTRPSLKRQTAAAHLRGQYQASIRQKKSNQVRQTATAQKEEVNSQPSTHLQPQPSAKQQS
RHNKSLVLAYNASADLSKVDHSDMRVSLTLKPNSVPDFGFQTQWDSTGVKIKSIQPGSPA
EHCQLCVDDEVVAVDGVALAYMTYSQWKDKMASSLQTGSLTMDIRRYGIKDWSMNKGSNL
NRPGQSMLTLNLTSAAPVLIGRSNHHANNAASTEMTDTQESQFNGQTDDETQEKAIGALF
SGNATNVGRKENNSITTENQKKRTEFFTQKGFAGISSSVYLCGGSESAISDIQVPSLNPS
SSSWSWDREEDRRRQEKWQEEQERLLQEQYQRDQERLEAEWQRAQQAAIEGGMLKGNTAE
QASGREKFVSSQLCVNGLMKETKDEKLNLNRDDGKDAELKRSNDAHRVQNNTNTENDWAE
GSHGFAQLSHAHRAMSMSTPSLSGPYRQTRGLVDPRKGRALTMSKAERERLQILEEMKKR
TQLLTDNSWIRQRSGSFHKEPIEVGTFMKRYESLDNLDILHQAPDSAATFTYPRPNSAAA
VYNYQSRNASTRYSTGSISFQRNANMESSHHARMISGRRTCCMCERALGSGAAMVIDALS
LCFHLTCFQCVGCHRHIGGTETGVQVRIRNRKPYCDYCYFQLKCECWTLQD
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgccagcagagcagcgtcagctgtaaagacgccttcaccgaggctcggcgc
tggattgaggaggtgactggaaaatcttttggctgcagcgacttccggtctgccctagaa
aatggagttctgctttgcgacttaatcaaccagttgaaacctgggattatcaaacggatg
aacagactttccacacccattgctggcctggataatgtgaatgtttttctgaaagcctgt
ggaaaacttggactaaatgagtcccagctgttccatcctggtgaccttcaggatctttcc
actcgggtgacactcaggcgtgatgaaagccagagaaggctgaagaatgttcttatcaca
atatactggctgggtcgcaaggctcagtttgacacatactacagtggtcctcagctaaat
ttcaaggcttttgaggggcttttaggattggccttgtccaaggctctagaagaaggcagt
aatacatctgtgaaagatggggtttacaaggagtgccactactcagagggagagcaaagt
ctgcaaacaagacagaattatgatagaggaaattcagtggatggctttgagtgtgtggat
ccccaagccgtccgcctaaatgaagaaggttttgaaagtgacgctgaagcagagcaagtg
tacaagatggacagcacgaaggtctcagcccacctggacaaaggacatatcccaccaccg
cttcgtagaaaacaggaacgggaagagagcatggtgggccaaatcccaagagcgtatcaa
acccaaatcaggcctgagacaccagttcaggtcaaccctggctggatttggagcaaatcc
ctcagtgacatccctatggtgtatcctgcgcgtaaagtttcaaatggaaatgccatttct
gataaaggccaagacaccagcctgccgagggactggaatctagaaattgaaagaaaatat
agcataggtgccagggacagcgaagctcagtggcaggatgatttgacgaggtggaagaat
cgacgcaagagctcaaagcctgaactgtacaggaggtcatttgaaagggatcatgtcttc
aaccatttgaccaatgggactgtaaccaattctgatggtaatgaagcaccaggagggccc
ataaagagagaccagtcgccatggcgacacagctcctctccccgtccttactctgtttct
ccatccaaacctctgagctctgatctcagaccacatactaaagttattttgacccgcagc
tacactactgaagcagctttcagctctcaaagccattctcgggagtctcaacttggaggc
aagcctgaatctggcgggtccatcagaggagaggaaacttactttgcctctttggctgca
gatggaagagacagagttaccaccccttctctataccaaactttcaccactcaaacccaa
gtaaaatctctgggcaaccagtttacctttccttccacatctgagcaaacacaaccagag
tgtgttttgccataccagaactcctctcttgcgaaattcacaaaaccaggactatttgat
agtaaagaatccacgagaagctgcaacgctgctttgtacaaacattcctttagcactgag
ccaaaagggagaatttgttctccagatgtagctggtgaatcaggagttactgtaacagag
gatctgacgaatcggatcaagaaatctcaagaaactcccaaaatcattgattcagctgag
gatggagtaacttgtcagcaggagtctgcaggggtctcgaagtatttgtccagaagtaca
acatggtccagttctgccagccttcctcgtgggtaccgtcggtctgagggttccactcgt
ctctcttctgcaatcacagccagaccttttgggacaaagccatccagacactcactacca
agacaatccaatgttgatggtcagagtttgatgtcaaacactgaggattcacattcctca
ttcaccagaccatctcttaaaagacagactgctgcagctcacctgaggggtcagtaccag
gcctcaattaggcagaagaagtccaaccaggtgaggcagactgctaccgcacagaaagag
gaagtgaacagtcagccctccacccacctacaacctcaaccttctgcaaaacaacaatct
cgccacaacaaaagcttggttcttgcgtataatgccagtgctgacctctcaaaggttgat
cacagtgacatgagagtgagcttgactcttaaaccgaacagtgtaccagactttggcttc
caaactcagtgggactccacaggagtaaaaataaaatctattcaaccaggcagtccagcg
gagcactgccagctgtgtgtggatgatgaggttgtggcagttgacggtgttgcacttgca
tacatgacctacagtcaatggaaggataaaatggcgtcctctctgcaaaccggtagtcta
accatggacattcggcgttatggtatcaaggattggagcatgaataaaggaagtaatcta
aaccggccaggacagagcatgttgaccctcaacctgacttctgcagcacctgttttaata
ggtcgctccaatcaccatgccaacaatgcagcctctacagaaatgacagacacacaagaa
tcccaatttaatgggcagacagatgatgaaacccaagagaaggccatcggtgcgctgttc
tctggcaatgccactaatgtcggacgtaaagaaaacaatagtataactacagaaaatcag
aaaaagaggacagaatttttcacacagaaaggctttgcaggaatcagctcatcagtttac
ttgtgtggaggctcagaatcggcaatatctgatattcaggtgccctcccttaacccatcc
tcatccagctggtcttgggaccgagaggaggatcgtaggcgtcaggagaagtggcaggaa
gagcaagaacgcctcctacaggaacaataccagcgagatcaagagaggctggaggcagag
tggcaaagggcacaacaggctgcaatagaaggggggatgctgaaggggaacacagctgag
caggcgagtggccgcgagaagtttgtcagttcacagctttgtgtgaatggactgatgaaa
gaaacaaaagatgagaagctgaacctcaacagagatgatggaaaagatgcagaactaaaa
cgttccaatgatgcacacagagtgcagaataacacgaatactgaaaatgattgggctgag
ggctcccatggttttgctcagctgtcccatgcgcacagggcaatgtccatgtcaactcca
tctctatctggaccatacagacaaacaagaggtttagttgatccaaggaagggaagagca
ctgactatgtcaaaggctgagagagagagactgcagattttggaggagatgaagaaaagg
actcagcttctgactgacaacagctggatacgtcagcgcagtggcagttttcacaaggag
ccaatcgaggttggcacgttcatgaagagatatgagtctctggacaacctggatattttg
catcaggccccagattctgctgcaacatttacttaccctcgccccaattcagctgctgca
gtttacaattatcagagtaggaatgcctccacacgctacagcactggatcaatatcattt
cagagaaatgcaaacatggagtcctctcatcatgccaggatgatcagtggcaggaggact
tgctgtatgtgtgaacgtgccctgggtagtggggcagccatggtcatagatgcccttagt
ctctgtttccacctgacctgtttccagtgtgtgggctgccaccgacacatcggaggaaca
gaaactggagtccaggttcgcatccgaaacaggaagccctactgtgactactgctatttc
caactgaagtgtgagtgttggactttgcaagactga
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