KEGG   Xiphophorus hellerii (green swordtail): 116719185
Entry
116719185         CDS       T07363                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
xhe  Xiphophorus hellerii (green swordtail)
Pathway
xhe03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:xhe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    116719185 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xhe03400]
    116719185 (tdp1)
DNA repair and recombination proteins [BR:xhe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     116719185 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 116719185
NCBI-ProteinID: XP_032417509
LinkDB
Position
4:complement(29294500..29302824)
AA seq 620 aa
MSQDSLHGKWTVSSSDDDDEVLPPSGTATPKSRRPAESSHVSSGSPSPVPGPAPPEVKAE
PDSAPVSALAVGSEARQSAARNQRNPVKFQTSPSLSGKRKKEPSDGSGWALSDSDDEDDA
EGKRNSRSKLPNRAAPNGEAKKPKKESERPPSPHGRLYYTDEPDDFFEASFPCLNDTYRF
YLNKVTGLDRKFNSGALHIRDILSPLFGTLKESVQFNYCFDIPWMVKQFPSEFRRCPVLI
VHGDKREAKARLLQQGQPFPHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLIR
ADWYQKTQGMWMSPLFPRLPEGSSESSGESPTFFKRDLLEYLASYRAPELDEWIQRIKEH
DLSETRVYLVASMPGRYVGADMERWGHLRLRKLLYDHTNPIPDEEQWPVIGQFSSIGSMG
MDKTKWLSGEFQRTLTTLGKSSLRSDPPVHLLYPSVEDVRTSLEGYPAGGSLPYSIQTAQ
KQIWLHSYFHCWKARRTGRTHAMPHIKTYMRVSPDSTQLLWFLVTSANLSKAAWGGMEKN
NTQIMVRSYELGVLYVPSAFSMKTFPIDTNPFPASSSSTLGFPVPFDLPPTSYSPTDQPW
IWNIPYSQEPDTHGNIWVPS
NT seq 1863 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtctgcatggcaagtggaccgtctccagcagcgacgacgacgatgaa
gttcttcctccttcgggaaccgcaacaccaaagtcccgtcgaccagccgagtccagtcac
gtctccagcgggtctccctctccggtaccaggaccagctcccccggaggtgaaagcagaa
ccggacagcgcccctgtgtccgctctcgctgttggttctgaggccagacagtcggcagcg
aggaaccagaggaacccagtcaagttccaaaccagcccgtcgctgagcgggaagcggaag
aaagagccctcggacggctccggctgggctctctcagacagcgacgacgaagacgacgca
gaagggaaaaggaacagccggagtaagctgccgaaccgggcggcgccaaacggcgaggcg
aaaaagccgaagaaggagagcgagcgtccgccaagtccccacggccgactctactacaca
gacgagccggacgacttctttgaggcgtcctttccctgccttaatgacacctacagattc
tacctgaacaaagtcacagggctggacaggaagttcaacagcggagcgctgcacatcaga
gacatcctgtccccattattcgggaccctgaaagagtctgtccagttcaactactgtttc
gatattccctggatggtgaagcagttcccatcagagttcagacgttgtccggttctgatc
gtccatggagacaagcgggaggccaaggcacggctccttcagcagggccagcctttccca
cacgttcgcttctgccaggctaaactggacattgcttttggaactcaccacacgaagatg
atgctgctgtggtatgaggaaggcttcagagtcatcatcctcacctccaacctcatcaga
gcggactggtatcagaagacgcaagggatgtggatgagtcctctgtttccacggttacca
gaggggagcagcgagagttcaggggagtcgcccaccttcttcaagcgggacctgctggag
tacctggcgtcgtaccgcgcaccagaactggacgagtggatccagcggatcaaagagcac
gacctgtcagagaccagagtttatttggtcgcctccatgccagggagatacgtcggcgca
gacatggagcgctggggccacctgaggctcaggaagctgctgtatgatcacacaaatcca
attccagacgaggaacagtggcctgtgattggccagttctccagcatcggctccatgggg
atggataagaccaaatggctgtcgggggaatttcagcgcacactgaccacactcggaaaa
tcctccctccgatcagaccctcccgttcatttgctctatccgtcagtagaagatgtgagg
acgagtttggaaggttacccagctggaggttctcttccttacagcatccagacggctcag
aaacagatctggctccattcctacttccactgctggaaggcgaggaggacagggaggact
cacgccatgccacacatcaagacgtacatgagggtttcaccggattccactcagctcctc
tggttcctcgtcaccagtgccaacctgtccaaggcggcatggggaggcatggagaagaac
aacacgcagataatggtgcgttcctatgagctgggggtcctctacgttccgtcagcgttc
agcatgaagacattccccatcgataccaatccatttcctgcctcctcctcatctacactt
ggattcccggtgccctttgaccttccgcctaccagctactcgccaacagaccagccatgg
atctggaatatcccatacagccaggaaccggacactcacggcaacatctgggtcccctct
tag

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