Xiphophorus hellerii (green swordtail): 116719720
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Entry
116719720 CDS
T07363
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116719720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116719720
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116719720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
116719720
NCBI-ProteinID:
XP_032418257
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Position
5:complement(11797577..11806714)
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AA seq
550 aa
AA seq
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MSGEEADKTATTDASAGDEEEEWLYGDESESKEEDEEPKLEAAASAPVETSTDDAAAVVV
DVHATGNGVVSESQGEAAGEDVESDSDSDDDDDDVRVTIGDIKTGAPQYTTYGTPPVNLN
IKTTGSRPYGQVTTKVKGVDLDAPGSINGVPVLEVDMESFEEKPWRKPGADLSDYFNYGF
NEDTWKAYCEKQKRLRMGLEVSTIGSVTSKISVQQGRTGNDKDVSSLAVHTSKTDFTSPV
SLYKSAVSQITRKTSGTIDVIGGQTATISRVEGRRRHNLEGNNIQVISEHSTSEAEPATA
KIPTFFPPGPLPPNIPPPPFLPPPPNVSTAPPLIPPPRLPITVPPPGFHPPTSGPPPSLI
PTMDSHTGGYDGRSVPPYPFPQGAYPPPLTGGVPPPWPPMVDNSKPWDYYSRREDKRDKE
RDRPRERTHEREREREHSPSTMSYTRSEGQIQQCDEERYRYREYQERGYAERHRDRASRE
KEERHRERRHREKEEGRHKSSRSSSSRRRHDSEEGDSHRRHKHKKSKRSKEGKEASEDMG
ADQENQEAME
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggaggaggcggacaaaacagccaccactgacgccagcgccggtgacgaagag
gaggaatggctttatggagatgaatcagaaagcaaagaggaagatgaagaacccaaactg
gaagctgctgccagtgcgcctgttgagacttcaacagacgatgctgctgctgttgttgtt
gatgtacacgctacggggaacggagtggtctctgagtcccaaggcgaagctgcaggcgag
gatgtggaaagcgacagcgacagtgatgatgacgacgatgatgtcagagttaccattggt
gacatcaaaactggagcgcctcaatacacgacatatggcaccccccctgttaacctcaac
ataaagacaacaggatccagaccttatggacaagtaaccacaaaggtgaagggagtggat
ttggacgcaccaggaagcattaatggtgttcctgtgctggaggtggacatggagagcttt
gaagagaaaccctggaggaagccaggagccgatctgtcagactatttcaactatggtttt
aatgaggacacctggaaggcttactgtgagaaacagaagaggctgcgaatgggcctagag
gtctctacaattggctcagtgaccagcaagatctctgttcagcagggcagaacaggaaat
gataaggatgtatccagtttggctgttcacacctccaagacagactttacgtctcctgtc
agcctctacaagtctgctgtcagtcagatcaccaggaagacaagtggtactattgatgtg
attggtggacagacagccacaatcagtagggttgagggaagacgcagacacaacctagag
ggcaacaacatccaggtgatatctgaacattcaacatcagaagctgaaccagccacagct
aagattcctaccttcttcccccctggaccgcttcctccgaacatacccccgcctcctttt
ctccctcctccaccaaacgtcagcactgcacctcctctcatacctccacccagattgccc
atcacagttcctcctcctggttttcaccctccaacaagcggccctccaccttctctaatt
cccacaatggacagccatactggaggctacgatggtcgctctgtcccaccgtacccattt
cctcaaggtgcttaccctccacccttaactggaggcgtgcctcctccttggccccccatg
gtggacaacagcaaaccctgggactattattcccgtcgggaagacaagagagacaaggaa
cgggaccggcccagagagcgaacgcatgagcgcgagcgagagagggagcacagcccctca
accatgagctacaccaggtcagaaggacagatacaacaatgtgatgaggagcggtatcgc
taccgtgagtaccaagaacgtggttacgcagagcgtcatcgtgatcgggcaagtcgagaa
aaagaggagagacacagagagaggcggcaccgagagaaagaggagggacgtcacaagtcc
tctcgcagcagcagcagtcgacggagacacgacagcgaggagggcgacagccacaggaga
cacaaacacaagaagagcaagaggagcaaggagggcaaagaggctagtgaggatatgggt
gcagatcaggaaaaccaggaggctatggagtag
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