Xiphophorus hellerii (green swordtail): 116721258
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Entry
116721258 CDS
T07363
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116721258
03015 mRNA surveillance pathway
116721258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116721258
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116721258
5.6.2.5 RNA 5'-3' helicase
116721258
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116721258
mRNA cycle factors
Common to processing body (P body) and stress granule
116721258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
ATPase
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116721258
NCBI-ProteinID:
XP_032420767
LinkDB
All DBs
Position
6:118471..148016
Genome browser
AA seq
1111 aa
AA seq
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MSVEAYGPSSQTLTFLDSEESELLGADTQGSEYDFTDFTLPSQTQTQGQTHGQLDNQVNG
SDVVLQNGDDPVGKASQLLAELNFEEDEEDAYYSKDLPLHACCYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVLIKCQLPKRFTVQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESFSLVDVGSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVI
CCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGPVVMCK
KAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK
GFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGII
TPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFL
NDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQF
NKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNMYFQTHDQIGMIGSGP
GPMSSLNIPIPFNLMMPPIPPPGYLGQLNGPSAGRGGSMKNKSASTGGSGTRGARQRNRG
DVGIDGGHMTGSQASQDQGSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagaccctgacgttcctggactccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccttg
cccagccagacgcaaacgcagggccagacccacggccagttagataaccaggtcaacggt
tcggatgttgtgctgcagaatggagatgaccctgtggggaaagccagccagctccttgca
gaattaaactttgaagaagatgaagaggatgcttactacagcaaggacctcccattgcat
gcctgctgttactgtggaattcatgatccagcctgtgtggtctactgcaacaccagcaag
aaatggttctgtaacggccgtggaaatacatccggcagccatatcgtgaaccacttggtg
agggccaagtccaaggaggtgaccctgcacaaagatggccctctgggagagacggtgttg
gagtgctacaactgtggctgccgcaacgttttcttgctgggcttcatcccagccaaggcc
gactcagtggtggtgttgctgtgcagacaaccgtgtgccagtcagagtagcctgaaggac
attaactgggacagctcccagtggcagccactcatccaggaccgctgcttcctgtcttgg
ctggttaaaatcccctcagaacaggagcagctccgggcccggcagatcaccgcccagcag
atcaataagctggaggagctgtggaaggaaaatcccactgctactctggaggacctggag
aagcccggagtggacgaggagccacagcatgtcctcctgcgttacgaggacgcctatcag
taccagaatatctttggtcctcttgtaaagctggaggctgactatgataagaaactgaaa
gagtcacagactcaagaaaatataacgattagatgggacctgggcctgaataaaaaaagg
attgcttatttcacccttcccaagactgactctgatatgcgactgatgcagggtgatgaa
atctgcctcagatataaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagttcctgacaactatggcgatgagattgccattgagcttcggagtagtgccggagct
ccggtggagatccctcataacttccaggtggactttgtgtggaagtccacctcctttgac
aggatgcagagcgccctgaaaacatttgctgtggatgagacttcagtttctggctacatc
tatcacaagttgctgggacacgaggtggaggacgtgctcattaagtgccagctgcctaaa
cgcttcactgttcaaggcctgcctgacctcaaccactctcaggtctatgctgtgaagaca
gtgttgcaacggcccctcagtctgatccagggtccccccggcacagggaagacggtcacc
tcagccaccatagtgtaccatctggctaggcagggaaccggaccagtgctggtgtgtgct
cccagtaacattgctgttgatcagctgactgagaagattcaccagacggggctgaaggta
gtgagactttgtgccaaaagcagggaagccatagattctccggtgtccttcctggctctg
cacaaccagatccggaacatggaaagtttctctctggttgatgtgggcagcatgccggag
ctgcagaaactccagcagctgaaggatgagactggagagctgtcgtcctctgacgagaag
cgctacagagctctgagacgcactgctgagcgggagcttctcatgaatgccgatgtgatc
tgctgcacatgtgttggagcaggagatccccgtctggctaaaatgcagttccgatcgatc
ttgattgatgaaagcactcaggccacagaaccagagtgcatggtgccggttgtccttggg
accaaacagctgattctggtgggggatcactgccagctggggcctgtggtgatgtgtaag
aaggcagcaaaagcaggcctgtcccagtctctctttgagcgccttgtggttctgggcatc
aggcccatccgtctgcaagtccagtaccgcatgcacccggccctcagcgccttcccctcc
aacatcttctatgagggctccttgcagaatggagttactgctgctgatcgggtgaaaaaa
ggctttgatttccagtggccacagccagacaagcccatgttcttctatgtcacccaaggc
caagaggagatagcgagctctggaacatcctatctgaacagaactgaggctgccaatgtg
gagaaaataaccacaaggttactgaaagctggggctaaacccgaccagataggcatcatc
actccctatgaaggacagcggtcctacctggtccagtacatgcagttcagtggctccctt
cataccaagctctaccaggaagtggaaatcgccagtgtggatgctttccaaggcagagag
aaagatttcatcatcctctcctgtgtgagagccaatgagcaccagggcattggcttcctc
aatgaccccagacgtctcaacgtggcgctcaccagggcccgatatggagtgatcattgtg
gggaatccgaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaag
gagcagaaggttctggtagaaggcccgttaaacaacctgagagagagcctcatgcagttc
aacaagccacggaagctggtcaacgccatcaacccgggtggccgcttcatgagcacagcc
atgtatgatgccagggaggctctgattcctggctctgtttatgaccgcagcagcaacggc
cgaccttccaacatgtatttccagactcatgatcagatcggtatgatcggttccggaccc
ggtccaatgtcgtccttgaacattcctattcccttcaaccttatgatgcctcctatccct
ccacctggttatttaggacagctaaacggcccctctgcaggtcgtggtggaagcatgaag
aataaatcagccagcacaggtggcagcggaactcgaggtgctcgtcaaagaaaccgtgga
gatgtgggaatagacggaggtcacatgactggtagccaggctagccaggaccagggctcc
cagccgttctcccaggggcccctcacacaaggctacatcagcatgagtcagccctcacag
atgagccagcccgggctctcccagcctgaactctcacaggacagttacctaggagatgaa
ttcaagtcccagtttgatgtggctctgtcccaggactccacataccagggcgaacgggcc
taccaacatggagtgactggactgtcccagtactag
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