Xiphophorus hellerii (green swordtail): 116722180
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Entry
116722180 CDS
T07363
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03030
DNA replication
xhe03410
Base excision repair
xhe03420
Nucleotide excision repair
xhe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116722180 (lig1)
03410 Base excision repair
116722180 (lig1)
03420 Nucleotide excision repair
116722180 (lig1)
03430 Mismatch repair
116722180 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xhe03032
]
116722180 (lig1)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116722180 (lig1)
Enzymes [BR:
xhe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
116722180 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
116722180 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
116722180 (lig1)
DNA replication proteins [BR:
xhe03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
116722180 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
116722180 (lig1)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
116722180 (lig1)
NER (nucleotide excision repair)
Other NER factors
116722180 (lig1)
MMR (mismatch excision repair)
Other MMR factors
116722180 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
116722180
NCBI-ProteinID:
XP_032422255
LinkDB
All DBs
Position
6:complement(25437550..25508900)
Genome browser
AA seq
1007 aa
AA seq
DB search
MQRSIASFFQPRSKAKDSQKKTADEPVNKPLKSPLKVQNGVQEADSPIKKVAKRSRQIVD
SDEDEVPLVKEQGDKGAPAKTEKTDDVFKAVLTPLSPTPAPSTPITLETPETSASSTSAS
STSSGTPSTPSSTSTSRIVKRKTARKMFPKRKLDESESRKGEFEVAEEQGQQNKRPRLES
SVSSAENTDEPMEEGAKEEKVEKPVAEANSPDEEVGNEKTEGEKAKKEEEQVEEKISDEK
EKKAEGAEKKNEAKKKTDDEKGPSVAKDKVVEKDTKDTGSPKSQMEEKKQKEAKEQKDKE
PAKKTPISSFFAPRKAAVKTEKPEKNEGEKKTSAERKSSEEEQKDAKGESTSGETNYDPS
RPNYHPVDHACWKRGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLLRSVLLLSPDDLLC
CVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRHLDKIKAEAQEKGDLGLVAESSRSN
QRTMFQPASLTAGGVFKKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGK
LRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQTYCE
MPNYDVIIPVLLKAGIDQLPKHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKY
DGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRVPKVKKDSVVSCVLDTEAVAWDREK
KQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRELLRESFTEV
EGEFLFARSIDSHDTDAIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDY
LDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHY
KFLKEHTLAKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGMVDAEKGIS
LRFPRFLRIRDDKKPEDATTGAQIADLYKKQQQIQNQGEKADPEDYY
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagcatcgcatctttttttcagcccaggagcaaggctaaagacagccagaag
aaaactgcagatgaaccagtgaacaagcccttaaagagccccctgaaggtgcagaacggc
gtccaggaagcggattcgccgatcaagaaggtcgccaagcgcagccggcaaatcgtggac
agcgacgaagacgaggtgccgcttgtaaaagaacaaggcgacaaaggagctcccgctaaa
accgagaagacggatgatgtgttcaaagccgtactcaccccgttgtctccaacgccggcc
ccatccacacccataaccctggaaaccccggagacgtcagcctcctcaacgtcggcctcc
tcaacgtcttcagggacgcccagtactcccagttccacctccacgtctagaattgtgaaa
cgcaaaactgcgaggaagatgttccccaagaggaagctggatgagagcgagagtcggaaa
ggggagttcgaggtcgcggaggagcagggtcagcaaaacaaacgaccccgcttggagagc
agtgtcagcagtgcagagaacaccgatgaacccatggaggagggagcaaaggaagaaaag
gttgaaaagccagtggctgaggctaacagcccagacgaggaggtggggaacgagaaaaca
gaaggagagaaggccaagaaggaggaggagcaggtagaagaaaagatctctgatgagaaa
gaaaagaaagctgagggggcggaaaagaaaaatgaagcaaagaagaagacggatgatgag
aaagggccttctgtcgccaaagacaaggtggttgaaaaggacacgaaagacacagggagc
ccaaaaagtcaaatggaagaaaaaaagcagaaagaggcgaaggagcagaaagataaggag
ccggccaagaaaaccccaatcagcagtttctttgctcccaggaaagcagcagttaagaca
gagaaaccagagaagaacgaaggagagaaaaagacgagtgctgagaggaagagctccgag
gaggaacagaaagacgcaaaaggtgaatcaacctcaggagagacgaactacgatccttcc
agaccaaactaccatccggtggaccacgcctgctggaaacgaggccaaaaagtgccgtac
ttggcagtggctcgcacctttgagaaaattgaagaggactctggcaggctgagaaacatc
gagacgctgtcgaacctgctccgctcggtgctgctgctctctccagacgacctgctgtgc
tgtgtgtacttgtgtctgaaccagctcggccccgcctaccttgggatggagctcggcgtc
ggggagacggttctgatgaaagccgtcgctcaagcaaccgggcgacatttggacaaaatt
aaagcggaggcgcaggagaaaggagatttgggcctcgtggccgagagttcccgtagcaac
cagcgtaccatgttccagccggccagtctgacagcaggaggcgtgtttaagaaattgaag
gaaattgccagcatgagtgggaactcggccatgaataagaaaatcgacatcatcaaaggc
ctctttgtggcgtgccgcttctccgaagcccgctacatagtcaggtccctggctgggaag
ctgaggattggcctcgctgagcagagtgtcctctccgccctgagccaggccgtctgcttg
accccgcctggacaaggtttccctcctgctgtgattgatgcagggaagggcatgagcgct
gagagcaggcgggcctggatcgaagagaagagcctcattctgaaacaaacatactgcgaa
atgccaaattatgacgtcatcatcccagttttactgaaagcaggcatcgaccagctgcct
aaacactgcaaactcactccaggagtcccgctgaggcccatgttggctcaccccaccaag
ggtgtcggcgaggtgatgaagaggtttgacgaggcagcgttcacctgcgagtacaaatat
gacggagagcgtgcacagattcacattctggaaagcggtgaagttcggattttcagccgc
aaccaggaagacaacaccagcaaatacccagatatcatctcgcgtgtccccaaggtaaag
aaggactctgtagtgtcttgtgttctggacacggaggcggtggcctgggatcgagagaag
aaacagatccaacccttccaagtcctcaccactcgtaagagaaaggatgtggacgcctca
gagatcaaagtccaagtgtgcgtgtatgcctttgacctcctttatctcaacggagagtcc
ctggtgcgacagccgctgtgtcggcgtcgggagctgctaagagagagcttcacagaggtg
gagggagagtttctgttcgcccgttccatcgattctcacgacactgacgccatcgcggag
ttcctggagcagtccgtccgagactcctgcgagggcctgatggtgaagactctggagaag
gacgcgacctatgagattgccaagcgttctcacaattggctcaagttaaagaaggactac
ctggacggtgtgggcgacacagtggacctctgcgtgatcggtgcctaccttggaaaggga
aaaagaacaggcacatacggtggcttcctgctggcctgctatgatgaagacaatgaggag
tttcagtcagtctgcaagatcgggacaggctttaaggatgaagatctggagcagcattac
aagtttttaaaggagcacaccctggccaagccccgcccatactaccgcgtggaccaatca
gccgagcccgacgtgtggctggacgccgtgcaggtttgggaggtgaagtgcgccgacctc
tcgctgtcacccgtctacaaggctgccatgggaatggtggatgcagagaaaggcatttct
ctgcggttccctcgtttccttcgcatcagagacgacaagaagcccgaggacgccaccacc
ggagctcagatcgctgatttgtacaagaagcagcaacagattcagaatcaaggggagaaa
gctgacccagaggactactactga
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