Xiphophorus hellerii (green swordtail): 116724509
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Entry
116724509 CDS
T07363
Symbol
pum3
Name
(RefSeq) pumilio homolog 3 isoform X1
KO
K14844
pumilio homology domain family member 6
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116724509 (pum3)
03009 Ribosome biogenesis [BR:
xhe03009
]
116724509 (pum3)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
116724509 (pum3)
Ribosome biogenesis [BR:
xhe03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
116724509 (pum3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPL
PUF
Motif
Other DBs
NCBI-GeneID:
116724509
NCBI-ProteinID:
XP_032426142
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Position
8:2575417..2583781
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AA seq
637 aa
AA seq
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MAAKPQKPFSSQPGRKPSFKGKGKGKDLAGTKFGGKPGAKKPFKPYKNAEKKSRPGKPND
GRKPGFSKAEKRKRPAGGGGPPAKREKNGKKPPTTEEELKKRLQKKRELKNNRQQAERKE
MFDIISRCKAVWGNLRRKKCDTEQKTKLMKELHGLIRGKIKQMAFAHDSVRVLQCFIQFG
NQKQRFEVFEELKDSVLDMSKSPYGKHVVKKLLMYGNKEMVAAIIQLFGGHIRKMLRHAT
ASTIVEYAYNDKAMLAQRLMITGELYGNTYAICKSLELNTIEKVLAANPEKLENILEETK
QAIVPLAQKEQVIRHSVVHKVFLDFFQFAPEKQRSEMIESIRESVVYMAHTHDGARVAMH
CLWHGTAKDRKVIIKTMKTYMVKFARGEFGHMVLLAIFDCVDDTKLVKQAVLSELLSVLP
EVLGNKHGKKVLLYLLRPRDPTHMLPDIVKLLEQGDGNAHSKKDMATRRRELLEAASPAL
LDHLQLNAAAMVTNKAASVTVRDILASACGDLRPAMTAVAQLANQELVQGGVEGQLHLAE
HPAGHLVLKWLIEQDAMLAENGREECFSRILVDTVGTETMKSWVKVNRGAMVLCSLLNSC
DGSVAAEVKAALTAIIPELRRISDHKGAEILLQNLNK
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaaaccccaaaagccgttctcctcccagcctggacgaaaaccgtcattcaaa
ggaaaaggaaaaggaaaagacttggcggggaccaaattcggagggaaacctggagcgaaa
aaacccttcaagccgtacaagaacgcagagaagaagagcagaccaggaaaaccaaacgat
ggcagaaaaccaggtttttctaaagctgagaagaggaaacgaccagcagggggcggaggt
ccgccggcgaagagggagaagaacggcaagaagccgccgaccacagaagaagagctgaag
aagcgactgcagaagaagagggagctgaagaacaaccggcagcaggcggagaggaaggag
atgtttgacatcatcagccgctgcaaagcagtatgggggaatctccggaggaagaaatgt
gacacagagcagaagacgaagctgatgaaggagcttcatggactgatccgtgggaagata
aagcagatggcgttcgcccacgactcggtccgagtcctccagtgtttcattcagttcgga
aaccagaagcagcgatttgaggtgtttgaggagctgaaagacagcgtcctcgacatgtcc
aagtcgccgtacgggaaacatgtggtgaagaagctgctgatgtacgggaacaaggagatg
gtggccgccatcatccagttgttcggtggtcacattcgcaagatgctccgccacgccacc
gcctccaccatcgtcgagtacgcctacaacgacaaggcgatgctcgctcagaggctgatg
atcaccggcgagctgtacgggaacacctacgctatctgcaagtcgttggagcttaacacc
atcgagaaggtgttggcggcgaacccggagaagctggagaacatcctggaggagaccaag
caggccatcgtgccgctggcgcagaaagaacaggtcatcaggcattctgtggtccataaa
gtctttctggatttcttccagtttgcacctgaaaagcaaagatcggagatgatcgagtcc
atcagggagtctgtggtctacatggctcacactcacgacggcgcccgggtcgccatgcac
tgcctgtggcacggcacagcaaaggacagaaaagtcattataaaaaccatgaagacctac
atggtgaagttcgccaggggggagtttggtcacatggttctcctggcgatatttgactgc
gtggacgacaccaagctggtcaagcaggcggttctgtcggagctgctgtccgtcctgccg
gaggtcctcggaaacaaacacggtaagaaggttctgctgtacctgctgaggcccagagac
cccacccacatgctgccggacatcgttaagctgctggagcaaggagacggcaacgcacac
agtaaaaaggacatggcgacccgccggcgggagctgctggaggccgcctccccggcgctt
ttggaccatctccaactgaacgctgctgccatggtaacgaacaaggcggccagcgtcacc
gtcagagacatcctggcgtcggcgtgcggcgacctgcggcctgccatgacggccgtggcc
cagctggccaatcaggagctggtgcagggaggagtcgagggccagctccacctggccgaa
cacccagcaggacacctggtgctgaagtggctcatagagcaggacgccatgttggccgag
aacggcagggaggagtgcttcagcaggatcctggtggacacggtggggacggagaccatg
aagagctgggtcaaggtcaaccggggagccatggtgctctgcagccttctgaacagctgt
gacggatctgtggctgctgaggtgaaggcggcactcaccgccatcatccctgagctccgg
agaatcagcgaccataaaggagccgaaatcctgctgcaaaatctgaacaagtag
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