Xiphophorus hellerii (green swordtail): 116724520
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Entry
116724520 CDS
T07363
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
xhe
Xiphophorus hellerii (green swordtail)
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xhe04121
]
116724520
Ubiquitin system [BR:
xhe04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
116724520
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-RING_10
DUF6266
Exonuc_VII_L
MRP-S31
Motif
Other DBs
NCBI-GeneID:
116724520
NCBI-ProteinID:
XP_032426162
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Position
8:7536923..7549016
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AA seq
558 aa
AA seq
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MEQHAVQLDRETFSCSICLDLLTDPVATPCGHSYCMNCIKGHWDEEDRKRIHSCPECRET
FRPRPALKKNTMLAALVEQLKKTGLQASPADHCYAGPEDVACDSCTGRKLKAIKSCLVCL
ASFCEKHLQPHHDVAPLKKHKLVEPSKNLQENICSKHDRLLEIFCRTDQKCICYLCSVDE
HKGHETVSAAAEMTERQRELEERRGNIQQRIQDQEKDVKLLQQEVEAINRSADKTVEDSE
KIFTQLIRLLQKRSSEVKQQIRSQQETKVSRVKDVQEKLEQEITELKRKDAELEQLSHTE
DHNQFLLNYPSLPALSESTHSSSINIRPLRHFEDVTAAVSELRDKLQDVLRDSWTNISLM
VTGADVLLSEPEPEPKSRAGFLRYSCEITLDPNTAYTRLGLSEGNRKVTRMNRDQSYSSH
PDRFTDYSQVLSRESLTGPCYWEVEWRESVYVAVAYKSISRTGSGNECAFGYNDKSWALD
CSQNNSTFWHNDIPTSISGPVSSRVGVYLDHTAGILSFYSVSETMTLLHRVQTRFTEPLL
AGVWIYVTGSSAEFCKPR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcacgcggttcagctggatcgagaaactttctcctgttccatctgtctggat
ctcctgacggatccagtggctactccctgtggacacagctactgtatgaactgcattaaa
ggtcactgggatgaagaggatcggaaaagaatccacagctgccctgagtgcagagagacc
ttcagaccaaggcctgctttgaagaaaaacaccatgctagcagctttagtggagcagctg
aagaagactggactccaagcgtctcctgctgaccactgttatgctggacctgaagatgtg
gcctgtgattcctgcactgggagaaaactgaaagctatcaagtcctgtttagtctgtctg
gcctctttctgtgagaaacaccttcagcctcatcatgatgtggctcctttaaagaaacac
aagctggtggagccgtccaagaacctccaggagaacatctgctctaagcatgataggttg
ttggagatcttctgccgcactgatcagaagtgtatctgttatctctgctctgtggatgaa
cataaaggccatgaaactgtgtcagctgcagcagaaatgactgagaggcagagagagctg
gaggagagacgaggaaatatccagcagagaatccaggaccaggagaaagatgtgaagctg
cttcaacaggaggtggaggccatcaatcgctctgctgataaaacagtggaggacagtgag
aagatcttcacccagctgatccgtctcctccagaaaagaagctctgaggtgaagcagcag
atcagatcccagcaggaaactaaagtgagtcgagtcaaagatgttcaggagaagctggag
caggagatcactgagctgaagaggaaagacgctgagctggagcagctctcacacacagag
gatcacaaccagtttctcctcaactacccctcactgccagcactcagtgagtctacacac
tcatccagcatcaacatccgtcctctgagacactttgaggacgtgacagcagctgtgtca
gagctcagagacaaactacaggacgtcctgagagactcatggacaaacatctcactgatg
gtcactggggcggatgttctactgtcagaaccagaaccagaaccaaagagcagagctgga
ttcttaagatattcatgtgaaatcactctggatccaaacacagcatacacacgactggga
ctatcagaggggaacaggaaggtgacaaggatgaatagagatcagtcttattctagtcac
ccagacagattcactgattattctcaggttctgagtagagagagtctgactggaccttgt
tactgggaggtggagtggagagagtcagtttatgtagcagtcgcatacaagagtatcagc
agaacaggatcgggtaatgaatgtgcttttggatataatgataaatcttgggcattagat
tgttctcaaaacaatagtacattttggcacaacgacattccaacctccatctcaggtcca
gtttcctccagagtcggagtgtacctggatcacacagcaggtattctgtccttctacagc
gtctctgaaaccatgactctcctccacagagtccagaccagattcactgaaccgctactg
gctggagtttggatttatgtaactggatcctcagcagagttctgtaaacccagatag
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