Xiphophorus hellerii (green swordtail): 116725133
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Entry
116725133 CDS
T07363
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03013
Nucleocytoplasmic transport
xhe03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116725133 (upf1)
03015 mRNA surveillance pathway
116725133 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhe03019
]
116725133 (upf1)
Enzymes [BR:
xhe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116725133 (upf1)
5.6.2.5 RNA 5'-3' helicase
116725133 (upf1)
Messenger RNA biogenesis [BR:
xhe03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116725133 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116725133 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
116725133
NCBI-ProteinID:
XP_032426903
LinkDB
All DBs
Position
9:5887583..5910015
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AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVVKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHHGNGPNSQA
SQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttcccagaccctcaccttcctggacaccgaggaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcaccgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgagggtcttcacaatggaggaatggatgactctgtggtcaaaaccagccagttg
ttgggcgagctcaactttgaggaggatgaagaagacacctactacaccaaagatcttcca
atacacgcatgcagctactgcggcatccatgacccagcgtgtgtggtgtactgcaacacc
agtaagaagtggttctgtaacggccgtggtaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgactcttcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccagct
aaagccgactctgtggtggtgctgctctgcaggcagccgtgcgcgagccagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcggagcaagagcagctccgcgcccgtcagatcaccgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggcgctacgttggaagac
ctggagaaacccggagtggatgaagaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatcttcggccctttggtcaaactggaggccgactatgacaaaaag
ctaaaggagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcttatttcacacttcccaagacggattcaggtgatatgcggctgatgcag
ggcgatgagatctgcctgcgctacaaaggagatctggctcctctgtggaaaggcatcggc
catgtcatcaaagtccccgacaactatggggatgaaattgccattgagctgcgcagcagc
gtcggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaact
tcctttgacaggatgcagagcgccttgaagacgtttgctgtcgatgaaacctccgtgtcc
ggttacatttaccacaaacttctgggtcacgaggtcgaagacgtcaccatcaagtgccag
ctgccgaagcgcttcaccgctccgggcctgccggacctgaaccactcacaggtttacgct
gtgaagacggtgctgcagcggccgctcagtctcatccaggggccgcccggcaccgggaag
accgtcacttccgccacgatcgtgtaccacctgtcccgacagggaaatggacctgtcctg
gtgtgcgctcccagtaacatcgccgtggatcagctgacggagaagattgacaagaccggc
ctgaaggtcgtcaggttgtgcgccaagagccgggaggccatcgagtctccggtctctttt
ctggcgctccacaaccagatcagcaacatggacagcatgccagagctccagaagctgcag
cagctgaaggatgagactggagagctgtcgtctgctgacgagaagcgttaccgggctctg
aagcgcaccgccgagagggagctgctcatgaacgctgacgtgatttgctgcacctgcgtt
ggagctggagatccccgtctggccaagatgcagttccggtccattctgatcgacgagagc
acccaggccaccgagccggagtgcatggtcccggtggtgctgggagcaaagcagctgatt
ctggtgggcgaccactgccagctgggtccggtggtgatgtgtaagaaagcggcaaaggcg
ggtttgtctcagtctctgttcgagcgactggtggtgctgggaatccggccgatccgcctg
caggtccagtaccgcatgcacccggctctcagtgccttcccgtccaacatcttctacgag
ggctccctgcagaacggcgttacagcagctgatcgcatcaagaaaggcttcgacttccag
tggcctcaaccggacaaacccatgttcttctacgtgactcagggtcaggaggaaatcgcc
agttctggaacgtcatacttgaacaggaccgaggcagcaaacgtggagaaaatcaccacc
aggttgttgaaggcaggagcgaaaccggaccagatcggcatcatcacgccgtacgagggt
cagcgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctgtat
cagcaagtggaaatcgccagtgtggacgccttccagggcagagaaaaggatttcatcatc
ctgtcctgtgttcgagccaacgagcatcagggcatcggcttcctgaatgacccgcggcgt
ctgaatgtggcgctgaccagagcaaagtacggagtgatcatcgtggggaaccccaaagcg
ctgtccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctg
gtggagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaaa
ctggtcaacaccatcaacccgggaggacgtttcatgagcaccgccatgtacgacgcccgc
gaggcgctcatcccaggctccgcctacgaccgcagcagcgctgctggacgtccgtccaac
atgtatttccaaactcacgatcagatcgggatgatcggaaccgggccgggtcagatggcg
gccatgaacatcccaatacccttcaacctggtgatgcccccgatgcctccgcccagctat
ctgggtcagaccaacggcccggctgcaggccgcggtgccatgaagggtaaacctggacgt
ggaggaaggcagcgggtccgcggctcggctcaccacggcaacgggcccaacagccaggcc
agccaggacggggcttcccagtccttctcccaggggccgctgactcagggttacatctcc
atgagccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggat
agctacctgggcgacgagttcaagtcccagatcgatgtagctttgtcccaggactcgact
taccagggtgaacgtgcgtaccagcatggcggggtgactggactgtcacagtattaa
DBGET
integrated database retrieval system
