Xiphophorus hellerii (green swordtail): 116729475
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Entry
116729475 CDS
T07363
Name
(RefSeq) general transcription factor IIH subunit 2-like isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116729475
09124 Replication and repair
03420 Nucleotide excision repair
116729475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116729475
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116729475
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116729475
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116729475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
DZR
Motif
Other DBs
NCBI-GeneID:
116729475
NCBI-ProteinID:
XP_032433958
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Position
12:complement(33698579..33715736)
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILYESKRKRVTQSHAQVRLGMMRH
IYVVIDCSRSMEDQDLKPNRLTSTLKLMEGFIDEYFDQNPISQVGIITTKNKRAEKLTEL
AGNPKKHIAALKKAVDSSCVGEPSLYNSLSLAIQTLKHMPGHTSREILIILSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEVRVCTVLTRDTGGSYHVILDESHFKELLMLHVKPPP
ASFSSESSLIRMGFPQHTVASLSDQDVKPSFSMSHLDSSGGPALTLGGYFCPQCQAKYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQAFIESPAENYQQNRFCQACQGQLKDKNVFAC
PLCRSVFCGECDLFIHESLHCCPCCIHNRTAT
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagccagagagagccaagcgctgggaaggaggttatgaaaggacatgggag
gtgcttaaggaggatgagtctggctcccttaaagccacagtggaggagattctgtacgag
tccaaaagaaaaagggtgacacaaagccatgcacaagtgaggcttgggatgatgcgccac
atatatgttgttattgactgttcacgcagtatggaggaccaggacttaaaacccaaccgt
ctcacctctaccctgaagctgatggagggattcatcgatgaatacttcgaccagaatccc
atcagccaggttggcattatcaccaccaaaaacaaaagggctgagaagcttacagaactt
gcaggaaatccaaagaagcacattgctgctctgaagaaagcagttgacagctcatgtgtc
ggagagccttccctgtacaactctctcagcctggctatacagactctcaagcacatgcct
gggcacaccagcagagaaatcctcatcatcctcagcagcctgaccacatgtgacccagct
aacatctatgagctaatcaagaccctgaagtctcttaaggtgcgagtgtcagtaattggc
ctctcagcggaagtccgagtgtgcacggttctgaccagagacacaggtggatcctaccat
gttatcctagatgagagtcacttcaaagagctgctcatgcttcatgtcaaacctccgcca
gcaagcttctcatcggaaagctctttaatacgaatgggttttcctcagcacactgtagcc
tctctgagtgaccaagatgtcaaaccgtcattcagcatgtctcatctagacagcagtggc
ggcccggctctgactctaggaggatacttctgtcctcagtgccaagcaaaatacaccgag
cttcctgtggagtgtaaagtctgtggtttgacgctggtgtctgctccacatctggccaga
tcctttcatcatctgtttcccctccaagcatttattgagagtccagctgagaattatcag
cagaataggttctgtcaggcctgtcaagggcagctgaaagataaaaatgtcttcgcctgt
cctttgtgtcgcagtgtgttctgtggagagtgtgatctcttcatccatgaatcactgcac
tgctgtccctgctgcattcacaatcggactgctacatga
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