Xiphophorus hellerii (green swordtail): 116731873
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Entry
116731873 CDS
T07363
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
xhe
Xiphophorus hellerii (green swordtail)
Pathway
xhe03022
Basal transcription factors
xhe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xhe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116731873 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
116731873 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xhe03021
]
116731873 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
xhe03400
]
116731873 (gtf2h4)
Transcription machinery [BR:
xhe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
116731873 (gtf2h4)
DNA repair and recombination proteins [BR:
xhe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
116731873 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
116731873
NCBI-ProteinID:
XP_032437650
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All DBs
Position
13:26049019..26082352
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AA seq
464 aa
AA seq
DB search
MKLRVQLQCKNLHEYLRELNPEILDRLYNHPATCLAVYRELPSLAKNYVMRMLFLDQPLP
QAAVALWVQKNSQRDHDDCVSVLTGLRLWHSQHLQGGLQGYILNPVFKDNLGTALLGGGA
QWADEGSSLGPDRHARDIESLDRYAMERWEVILQFMVGSPSAVSQDLAQLLIQAGLMRSE
AGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQSRGMDLVEILSFLFQLSFSTLGRDY
SVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLAAGVTSSSASTSSTNIASI
PGTKDGGFIVVETNYRLYAYTDSELQIALVALFSEMLYRFPNVVVAQLTRESVQQAIANG
ITAQQIIHFLRTRAHPVLLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQADF
EVLRDRAQGLGCLVWQDVAHRVMVVTSQGHSEVKRFWKRQRSHI
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgggtccagttgcagtgtaagaatctccatgaatacttaagagaactgaat
cctgagatactggacagactgtataaccacccagcaacatgtctggctgtctacagggag
cttccctcactagctaagaactatgtgatgcggatgctgttcctggatcagcctctcccc
caggcagctgtggcactttgggtacaaaaaaatagtcagagggatcatgatgactgtgtc
tcagtgctgaccggtcttcgcctttggcacagtcagcaccttcaaggtgggcttcaagga
tacattttaaatccagtgttcaaagacaacctgggaacagcattgcttggaggaggtgca
cagtgggcggacgaggggagcagcctggggcctgaccgccatgcacgcgacattgagagc
ttggaccgctatgctatggaacgctgggaagtgatcctgcagttcatggtgggttcacct
agtgctgttagtcaagacctggctcagctcttgattcaagccggcctcatgagaagtgag
gcaggggaagcaccgtacatcacttccgctggttttcagttcctccttctggacacagcc
tctcagctttggtacttcactttgcagtacctcaaaactgctcagtctagagggatggac
cttgtggagatcttatccttcttgttccagctcagtttttctactttggggagagattac
tcagtggaggggatgagtgagtcattgctaactttcctgcagcaccttcgggagtttgga
ctggtgtttcagaggaagaggaagtcccggcggtactatcccaccagactggcaattact
ttggctgctggagtaactagcagctccgcctctacctcctccaccaacattgcttccatt
cctggaactaaagatggtggcttcattgttgtggaaaccaattatcgtctctacgcctac
acagattcagaacttcaaattgctctggtggctcttttcagtgaaatgttgtatcgcttt
cccaacgtggtggtcgctcagcttacaagagaatctgttcagcaggccatcgctaatgga
attaccgctcagcagatcatccactttctaaggaccagagctcaccctgtcctgctcaca
cagaccccagtgctgcctccaactataacagaccagatcagactgtgggagctcgagaga
gatcggctgcaattcacagagggagtgctctacaatcagttcctgtcccaagcagacttt
gaggtgctgcgagacagagctcagggtttgggctgtctggtgtggcaggatgtggctcac
agggtgatggtggtgacatcccaaggacacagcgaggtcaagaggttctggaaacgacag
aggtctcacatatag
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