Xanthomonas hortorum: XJ27_00695
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Entry
XJ27_00695 CDS
T05082
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XJ27_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xhr03019
]
XJ27_00695
03009 Ribosome biogenesis [BR:
xhr03009
]
XJ27_00695
Enzymes [BR:
xhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XJ27_00695
Messenger RNA biogenesis [BR:
xhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XJ27_00695
Ribosome biogenesis [BR:
xhr03009
]
Prokaryotic type
rRNA helicases
XJ27_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
adh_short
P-loop_SecA
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ASW44647
LinkDB
All DBs
Position
169549..171474
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AA seq
641 aa
AA seq
DB search
MTQESSAPLLFADLGLSDAVMKAVANVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPQRNERADRGDRGERPRFEPKFERGPRA
DGERAARPPRAERPAFAGDGAERPRRDPVAPRGEPEVGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
SPSKPRFPRSGKPAGRPNGPNRPMDRAGAPHRKGPPKPRGE
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaagccgttgccaacgttggctacgagaccccttcgccgatccaggctgccaccatt
cccgcgctgcttgccggccgcgacgtcctcggccaggcgcagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctgaaccagctcaagccgcaggcg
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggccttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggtggccagccctacgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtgggcactcccggccgcgtgatc
gatcacctggatcgcggcaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgctgttttccgcgaccatgccgccggcgatccgccgtatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagacgaccacctcg
gccaacatccgccagcgctattggtgggtgagcggcttgcacaagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccggt
accgaagaactggcgcagaagctgcaggcgcgcggtctggccgctgccgccatcaacggc
gacatgcagcaggccgcccgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggttgccaccgacgtggccgcacgcggcctggacgtggagcgcgtcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggc
cgtgccggccgcaccggcgatgcgatcctgttcgtcaccccgcgtgagaagggcatgctg
cgttcgatcgagcgcgcgacccgtcagccgatcgaagaaatgcagctacccagcgtggat
gcggttaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccttggccggc
ggccagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgatatcgccgcggcgatggccaagttgctgcaaggcgattcgccgttcctgctg
accccgccggtgcgtggcgcacgcgaggaattcgcaccgcagcgcaacgagcgtgccgat
cgcggtgatcgtggcgagcgtccgcgcttcgagccgaagttcgagcgtggcccgcgtgcc
gatggcgagcgcgctgcgcgtccgccgcgtgccgagcgccctgcgtttgccggtgacggc
gccgagcgtccgcgtcgcgacccggtcgctccgcgtggcgaaccggaggtcggcatggag
agctaccgcatcgaagtgggccacacccacggcgtgaagccggccaacatcgtcggcgcg
atcgccaacgaagcgggtctggaaagccgctacatcggccgtatcgacatccaggatgat
tattcgattctggatctgccggccgacatgccgcgcgaattgctgacgcacctgaagaag
gtctgggtgtccggccagcagctcaacatgcgcaagctggaagagggcgaggctgcggct
tcgccatccaagccgcgcttcccgcgtagcggcaagccggccggtcgcccgaatgggccg
aaccgtccgatggaccgtgccggtgcgccgcatcgcaagggtccgcccaagccgcgcggc
gagtaa
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