KEGG   Xanthomonas hortorum: XJ27_00695
Entry
XJ27_00695        CDS       T05082                                 
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
xhr  Xanthomonas hortorum
Pathway
xhr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:xhr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    XJ27_00695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xhr03019]
    XJ27_00695
   03009 Ribosome biogenesis [BR:xhr03009]
    XJ27_00695
Enzymes [BR:xhr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     XJ27_00695
Messenger RNA biogenesis [BR:xhr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     XJ27_00695
Ribosome biogenesis [BR:xhr03009]
 Prokaryotic type
  rRNA helicases
   XJ27_00695
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19 adh_short P-loop_SecA Flavi_DEAD
Other DBs
NCBI-ProteinID: ASW44647
LinkDB
Position
169549..171474
AA seq 641 aa
MTQESSAPLLFADLGLSDAVMKAVANVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKT
AAFALPVLSNADLNQLKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKL
PEKRQVALFSATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALT
RILEVEPFDGMIIFARTKAGTEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLD
ILVATDVAARGLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRTGDAILFVTPREKGML
RSIERATRQPIEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVP
AIDIAAAMAKLLQGDSPFLLTPPVRGAREEFAPQRNERADRGDRGERPRFEPKFERGPRA
DGERAARPPRAERPAFAGDGAERPRRDPVAPRGEPEVGMESYRIEVGHTHGVKPANIVGA
IANEAGLESRYIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAAA
SPSKPRFPRSGKPAGRPNGPNRPMDRAGAPHRKGPPKPRGE
NT seq 1926 nt   +upstreamnt  +downstreamnt
atgacccaagaatcttccgcgccgctgctgtttgcagacctcggcctctcggacgctgtg
atgaaagccgttgccaacgttggctacgagaccccttcgccgatccaggctgccaccatt
cccgcgctgcttgccggccgcgacgtcctcggccaggcgcagaccggtaccggcaagacc
gccgcgttcgcgctgccggtgctgtccaacgccgatctgaaccagctcaagccgcaggcg
ctggtgctggccccgacccgcgagctggccatccaggtcgccgaggccttccagaaatat
gccgaagccattcccggcttccgcgtgctgccggtctacggtggccagccctacgcccag
cagctgagcgcgctcaagcgcggcgtgcatgtggtggtgggcactcccggccgcgtgatc
gatcacctggatcgcggcaccctggatctgtcccagctcaagacgctggtgctggacgaa
gccgacgaaatgctgcgcatgggcttcatcgacgacgtcgaagcggtgctgaagaagctg
ccggaaaagcgccaggtggcgctgttttccgcgaccatgccgccggcgatccgccgtatc
gcgcagacctatctgaaggacccggccgaagtcaccatcgcggccaagacgaccacctcg
gccaacatccgccagcgctattggtgggtgagcggcttgcacaagctggatgcgctgacc
cgcattctcgaggtcgagccgttcgacggcatgatcatcttcgcgcgcaccaaggccggt
accgaagaactggcgcagaagctgcaggcgcgcggtctggccgctgccgccatcaacggc
gacatgcagcaggccgcccgcgagaagaccattgcccagctcaaggacggcaagctggac
atcctggttgccaccgacgtggccgcacgcggcctggacgtggagcgcgtcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctatgtgcaccgcatcggccgtaccggc
cgtgccggccgcaccggcgatgcgatcctgttcgtcaccccgcgtgagaagggcatgctg
cgttcgatcgagcgcgcgacccgtcagccgatcgaagaaatgcagctacccagcgtggat
gcggttaacgacacccgcgtggcgcgtttcatgacccgcatcaccgagaccttggccggc
ggccagatcgagatgtatcgcgatctgctgcagcgctacgagagcgagaacaacgtgccg
gcgatcgatatcgccgcggcgatggccaagttgctgcaaggcgattcgccgttcctgctg
accccgccggtgcgtggcgcacgcgaggaattcgcaccgcagcgcaacgagcgtgccgat
cgcggtgatcgtggcgagcgtccgcgcttcgagccgaagttcgagcgtggcccgcgtgcc
gatggcgagcgcgctgcgcgtccgccgcgtgccgagcgccctgcgtttgccggtgacggc
gccgagcgtccgcgtcgcgacccggtcgctccgcgtggcgaaccggaggtcggcatggag
agctaccgcatcgaagtgggccacacccacggcgtgaagccggccaacatcgtcggcgcg
atcgccaacgaagcgggtctggaaagccgctacatcggccgtatcgacatccaggatgat
tattcgattctggatctgccggccgacatgccgcgcgaattgctgacgcacctgaagaag
gtctgggtgtccggccagcagctcaacatgcgcaagctggaagagggcgaggctgcggct
tcgccatccaagccgcgcttcccgcgtagcggcaagccggccggtcgcccgaatgggccg
aaccgtccgatggaccgtgccggtgcgccgcatcgcaagggtccgcccaagccgcgcggc
gagtaa

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