Xanthomonas hortorum: XJ27_16255
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Entry
XJ27_16255 CDS
T05082
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xhr
Xanthomonas hortorum
Pathway
xhr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XJ27_16255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xhr03400
]
XJ27_16255
Enzymes [BR:
xhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XJ27_16255
DNA repair and recombination proteins [BR:
xhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XJ27_16255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
CNDH2_M
Motif
Other DBs
NCBI-ProteinID:
ASW47341
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All DBs
Position
3735683..3738457
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AA seq
924 aa
AA seq
DB search
MSLHDYNAKRRFDQTPEPAGETPARASKQPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRVGEKRLAVQVEDHPLSYASFEGDIPQGHYGAGHVDVFDHGHWHCEGDALAALDA
GKLEFELQGTLLRGGFALVRTQMRGGKPQWLLFKRTDAYATDLDADALVAQQAAGASDVA
TSATRAKTASVTTRGKTSRAQRVPPDAIAETSTVTSKRVRSGRAGSKQWRTRALALDGAR
DTPCPTELRAQLTLLREQAPEGERWLHEIKWDGYRLLADMVDGNVQLRSRNDQAWTQRFP
EVVRALQALPVRDARLDGELVVLDAQGRSDFSALQRALDGSVTQPLRYIVFDLLGVAGVD
LRGTPLLQRKQLLRELLGDQPGTLAFSDHVIGHGPEVFAASAGTGWEGIVSKLAEARYRE
GRSADWVKTKHANSDEFVVVGYTDPKGARSGFGALLMAQRDGKTLRYVGRVGTGFDDALL
GKITTLLQALHSETATLELPTHIPGRPRDVHWVRPVLIAEVAFRGWAKEGLLRQAAFKRL
REDKPMSELGGDRAVPGKPRAANRSGDATRAIAPARKTATKKAAKTTAEPSTRTASKRVR
STASKTTAISKTAASKSRASKSAASKSTASKSTSTDGINITHPERVVFPAVGISKGDVAD
YYRAVAPLVLAEIARRPLSLLRCPDGTGGECFFQKHEGRHLGAHIKAIALKQKSGTEDYI
YVEDAAGLLELVQMNTLELHPWGAQIEDPEHPDRLVFDLDPGDDVSWPDVVAAARDIRAK
LRSAGLESAVRLSGGKGLHMVVPIVPEAGWEQARDFCEAFAQALATHTPDRYVATMSKAK
RHGVIFVDWLRNGRGNTSVCSWSLRAREKATVAVPLRWEELGKISGPDAFPMDKALQRAK
RQRADPWESVLALQQYLPTGDDHN
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgcacgactacaacgccaagcgccgcttcgaccagacaccggaaccggccggc
gagacgcctgcgcgcgccagcaagcagccgattttcgtggtgcagctgcaccacgccagc
tcgcgccattacgacttccgtctggaagccgatggcgtgctcaagagttgggccgtgccg
aagggtccgtcgttgcgcgttggcgaaaaacgccttgcggtgcaggtggaagatcatccg
ttgtcgtacgccagtttcgaaggcgatatcccgcaagggcattacggcgcaggccatgtg
gatgtgttcgaccacggccattggcactgcgaaggcgatgcgttggccgcgctggacgcg
ggcaagctggaattcgagttgcagggcacgctgctgcgcggtggctttgcgttggtgcgc
acgcagatgcgtggcggcaaaccgcagtggctgctgttcaagcgcaccgatgcctacgcg
accgatctggatgccgatgcactggtggcgcagcaggccgccggtgcatcggatgtggca
acttcggcaacgcgtgccaagacagcatcggttacaacgcgcggcaagactagccgtgcg
caacgtgtgccgccagacgcaatcgccgagacatcgacagtgacaagcaaacgtgtgcgc
tcagggcgtgcagggtccaaacagtggcgtacccgcgcactggcgctggatggcgcgcgc
gatacgccatgcccaaccgagctgcgcgcgcaactgaccttgctgcgcgagcaggcgccg
gagggcgagcgctggctgcacgagatcaagtgggacggctatcgcctgctggccgatatg
gtcgatggcaacgtgcagttgcgctcacgcaacgaccaggcctggacgcagcgcttcccg
gaggtggtgcgcgcgttgcaggcgttgccggtgcgcgatgcgcgcctggatggcgagctg
gtggtgctggacgcgcaagggcgcagtgatttctcggcgctgcaacgcgcgctcgatggc
agcgtcacgcagccgctgcgctatatcgtgttcgacctgctcggggtcgccggggtggat
ctgcgcggcaccccgttgctgcaacgcaagcaattgctgcgcgagttgctgggcgatcaa
ccgggcacgctggcatttagcgaccatgtgatcggtcacggcccggaagtgttcgcggcc
agtgccggcaccggctgggaaggcatcgtcagcaagctggctgaagcgcgttatcgcgaa
ggacgcagcgccgattgggtcaagaccaagcacgcaaacagcgacgagttcgtggtggtg
ggctacaccgaccccaagggcgcacgcagtggttttggcgcattgctgatggcgcaacgc
gacggcaagacgctgcgctatgtcgggcgtgtaggcaccggtttcgacgatgccttgctc
ggcaagatcaccacactgttgcaggcgctgcatagcgagactgccacgctggaattgccc
acgcatatccctgggcggccacgcgatgtgcattgggtgcgaccggtgttgatcgccgag
gtggcctttcgcggttgggccaaggaagggctgctgcggcaagccgcgttcaagcgtttg
cgtgaggacaaacccatgagcgagttgggcggcgatcgcgccgtgccgggcaagccgcgt
gctgcgaatagaagtggggatgcgacgagggccattgcgcctgcgcgcaagaccgcgaca
aagaaagcagccaaaacgacagccgaaccatccaccaggactgccagcaaacgcgtgcgt
tcgacggcatcgaagacgaccgctatatcgaagactgcagcgtccaaatccagggcatcg
aaatccgcagcgtccaagtccaccgcgtctaagtccacgtccacagacggcatcaacatc
actcatcccgagcgcgtagtgtttcctgcggtcggtatcagcaagggcgatgtggctgac
tactaccgcgcagtggcgcccctggtgctggcggaaatcgcacgccgcccgttatcgctg
ttgcgctgccccgacggcaccggcggcgagtgcttcttccagaagcacgaaggtcgccat
ctgggcgcgcatatcaaggcgattgcgctaaagcaaaaaagcggcaccgaggactacatc
tatgtcgaagatgccgccggcctgcttgagctggtgcagatgaacacgctggagttacat
ccctggggcgcgcaaatcgaagacccggagcatccggatcgcctggtgttcgatctggat
cccggcgacgacgtgtcctggcccgatgtggtcgccgccgcgcgcgacatccgcgccaag
ctgcgcagtgcagggctggaaagcgcggtgcgcctgtccggaggcaagggcctgcacatg
gtggtgccgatcgtgccggaggcgggttgggagcaagcgcgcgatttttgcgaagcgttc
gcacaggcactggcaacgcacaccccggaccgctacgtggcgaccatgagcaaggccaag
cgccacggcgtgatcttcgtcgactggctgcgcaacggacgcggcaataccagtgtgtgt
tcgtggtcgctacgcgcccgcgaaaaagccaccgtcgccgtgccgctgcgctgggaagaa
ctcggcaagatcagcggcccggatgcgtttccgatggacaaggcattgcaacgtgccaag
cgccaacgcgcagatccatgggaatcggtgctggcgttgcagcaatacttgcccacgggc
gacgatcataactaa
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