Candidatus Xiphinematobacter sp. Idaho Grape: AMD24_00407
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Entry
AMD24_00407 CDS
T04108
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
xii
Candidatus Xiphinematobacter sp. Idaho Grape
Brite
KEGG Orthology (KO) [BR:
xii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xii03032
]
AMD24_00407 (gyrB)
03400 DNA repair and recombination proteins [BR:
xii03400
]
AMD24_00407 (gyrB)
Enzymes [BR:
xii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
AMD24_00407 (gyrB)
DNA replication proteins [BR:
xii03032
]
Prokaryotic type
DNA Topoisomerases
AMD24_00407 (gyrB)
DNA repair and recombination proteins [BR:
xii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AMD24_00407 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Vac_Fusion
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ALJ56583
UniProt:
A0A0P0FZ09
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Position
complement(439692..442217)
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AA seq
841 aa
AA seq
DB search
MADLHSDLKDLKTQEYGWRQIDRLEGLESVRKRPGMYIGDPDERGLHHCVFEVLDNSIDE
HLAGFCTRIEVSIRSDGSVSICDNGRGIPIERHPKWQMPVLELVLTNLHAGGKFGQGAYR
YSGGLHGVGAKCVNALSEWFKVDVLRDGKVYRMAFERGKTMQQLTVLGDLKDRGQTGTVV
SFLPDPEIFITTTEFKYERLAVRLRELAFLNPGIEISLSDEREDEVRKPRSETFLYKNGI
SEFVRQLGENKQLLHPNPIAVSGRRGDVFVDAVLQYNDSYSDQILCFSNSISNPDGGTHL
TGFRTALTRAVNQYVKANNLLKERSFFLSGDDVREGLICILSVKLTNPRFESQTKVKLVN
TEVEGIVHSVIYEGLMGYFDEAPTVARWIVEKCLMAARARDAARRARETVRKGILTGGGL
PGKLSDCSERDPSLTELYIVEGDSAGGSAKQGRDRRYQAILPIRGKLINVEKARLDRVLQ
NTEIQAVITAIGTGIGVGEGEGFFNLGKLRYGRIIIMTDADVDGSHIRALLLTFFFRQMQ
ELVRRGYVYIAQPPLYQIKRKRHEEYVEDDVQLNRILLTLGAEEVRLVDLADNNREFTQP
QLKEILALLERLERHGNTLRKLGGDFGAYLASMHPQRGTLPTHLVQIRDGNNETVRFFHD
EEELRDFAATNQDLALFEEKVETNNGVGLVSGNQHHRRCRLMTIHESAGVEKLIRELFKW
GFRAEHYSVQKNPIFILAEGTVGDRQIHHAIFAIPRILELVMEIGRRGVQIKRFKGLGEM
NARELFETTMNPGKRRLLKVRLDETNAVEADKTFTILMGEMVEPRRHFIEDNALNVRNLD
I
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttgcacagcgacctaaaggacctaaagactcaagagtacggatggagacag
atcgataggctagagggattagagtccgtacgcaaacggcctggcatgtatatcggcgac
cctgacgaacgtgggttgcaccattgtgtttttgaggtccttgacaactctatcgacgag
catcttgcggggttctgcactcggattgaggtctccatccgcagcgatgggtcagtatct
atctgtgacaatggtcgtggtattccaatagagcgtcacccaaagtggcaaatgcccgtc
ttggagcttgtccttaccaatctccatgcaggtggtaagtttggtcagggggcgtatagg
tatagtggtggtctacatggtgtgggggctaaatgtgttaatgcgctttctgaatggttt
aaagtggacgttctaagagatggcaaggtgtaccgtatggcctttgaacgcggtaaaact
atgcaacagttgacggttctcggagatcttaaagatagggggcaaactggaacagtagtt
tcatttttgcctgatccagaaatttttataactactacagagtttaagtatgaacgactg
gccgtgcgtttacgtgaacttgctttccttaatcctggcattgaaatttccctctccgac
gagagggaagatgaagtccgaaaacctcgctctgagacattcctttacaaaaacggcata
agtgaattcgtccgtcagcttggagagaataagcagcttctccatccaaaccctattgct
gtttctggtcgacgcggagatgtttttgtggatgcagtcctacagtataatgactcctac
tcggaccaaattctctgcttcagtaattcaatttccaacccggatggtggaacacactta
accggatttcgcacggcgcttacacgggctgtcaatcaatacgtgaaagccaacaaccta
cttaaagagaggagtttttttttaagtggtgatgatgtccgtgaagggctcatttgcatc
ttgagcgttaagctgaccaatccaagatttgaatctcaaaccaaagtcaaactcgttaat
actgaggtagaaggaattgtccattccgtcatatatgaagggttgatgggctactttgat
gaagctcctacagtcgctaggtggatcgtggaaaaatgcctaatggccgcgcgagccaga
gatgcagcaagacgggccagggaaactgttcgtaagggcattcttactggaggagggttg
cccggtaaactctccgattgttcagaacgggatccttcccttaccgaactttacatcgtt
gagggggattccgctggaggatctgctaagcagggtagggatcgtcgctatcaggctatt
ctccctatccgcggtaagctaattaacgtcgagaaggcccgcctagatagggtccttcaa
aatactgaaatccaggctgtgattaccgcaattggaacaggcattggagtcggagagggg
gagggatttttcaacttggggaagcttcgttatggacgtattatcatcatgactgatgcc
gatgtggatggttcccatattagggctctactgctcacattcttttttcgccagatgcaa
gagctggtacgccgcggctacgtttatatcgctcagcctcccctctatcaaattaagcgt
aagaggcatgaggagtacgtggaagacgatgtccagcttaatcgtattctccttacactt
ggtgctgaggaagtgcgtcttgtggatttggcagataacaatagggaatttacgcagccc
cagcttaaggaaattctagcgctattggaacgcctagaaaggcacggaaatactcttcga
aagcttggtggagactttggggcttacctcgcatcgatgcaccctcaaagagggactctc
cccacacatctagtacaaattcgcgacggaaacaatgaaaccgttaggtttttccacgat
gaagaggaattgagggacttcgcagccaccaatcaggatctagcgctttttgaggaaaaa
gtagaaacaaacaatggggtaggattggtttctggaaatcagcaccatcgccgctgccgg
ttgatgacaatccatgagtccgctggagttgaaaagcttatccgtgaattgtttaaatgg
ggttttcgtgctgagcactactcagtccaaaaaaaccccattttcatcctagcggaaggt
actgtaggagaccgacaaattcaccatgcaatattcgcgattcctcgcatcttggagctc
gttatggaaattggcagaagaggtgtccaaatcaagcggtttaaaggattgggagagatg
aatgctagagagctctttgagaccacaatgaatcctggaaaacgtaggctcctaaaggtt
cggttggatgaaaccaacgcggtggaagcagataaaacatttaccattttaatgggggag
atggtagagccacggaggcattttattgaggacaatgctctaaatgtccgcaacctggat
atctga
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