Xenopus laevis (African clawed frog): 108702463
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Entry
108702463 CDS
T01010
Symbol
dhx58.S
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
108702463 (dhx58.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xla04054
]
108702463 (dhx58.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108702463 (dhx58.S)
Pattern recognition receptors [BR:
xla04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
108702463 (dhx58.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_19
Flavi_DEAD
SRP_TPR_like
PhoH
Terminase_6N
AAA_22
L_lactis_ph-MCP
Motif
Other DBs
NCBI-GeneID:
108702463
NCBI-ProteinID:
XP_018093423
Xenbase:
XB-GENE-17338143
UniProt:
A0A1L8EKI0
A0A974BS13
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All DBs
Position
9_10S:667165..675240
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AA seq
681 aa
AA seq
DB search
MELHDYQWEVIAPALQGKNIIIWLPTGAGKTRAALYVAMRHLEMKQNTKVVLIVNKVHLV
DQHYSNEFHPHLKDKHKVVAISGDTEHKCFFAQLVQNNDVIICTAQILHNALSSTSEEMH
IELTDFTLLIIDECHHTHKDGVYNKLMEGYLERKIHQKGKLPQILGLTASPGTGRATSFE
KAVEHILQICANLDTWRIMSAEVHREDLEAKAKQPNKQYDLVTERPRDPFGDKLKEIMKT
IHEYLRIEDFCESDYGTQTYEQKVVELEKEGAVEANRMKQTCALHLRKYNDSLLVHDTVR
MMDAYELLDNFYQTEKVIRKQNDPTDAFLIQLFDSNQARLLELAEDIRFENPKLTKLEEI
LEDQFQISSGSRGIIFTRTRQSTHSLHKWISSKHSFQIMGVKTAPLTGAGYSNQSKHMTQ
NEQRETIEMFRKGQLNLLISTSVAEEGLDIPQCNIVVRYGLMTNEIAMVQARGRARREDS
CYSFLAKMGGKEVRREETNETLEGLMKRAIEAVQRMPEQEYEKKKEELQKESLITRKAKQ
AKIDEKKNKFYPEQVRVYCRYCSQAVAHGDDFRTIKGVHHVNINPDFRVYYEVCSPPIDF
GKKMVDWIPGGNIRCHCGQEWGFEMIYKHVNFPSVSIDNFVVETPESKRHYGQWKKVPFP
VGELNYSLYIEMHPELLLLDD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcatgactaccagtgggaggtgattgccccagctttacagggcaagaacata
ataatctggcttccaactggtgctggcaagacaagggcggcactgtatgtggcaatgagg
cacctggagatgaagcaaaatacaaaagtggttcttatagttaacaaggtccatcttgta
gatcagcactatagcaatgagtttcatccccatctcaaagacaagcacaaggttgttgcc
atcagcggggacactgagcacaaatgcttctttgcacaacttgtgcagaataatgatgtc
atcatctgtacagcccaaattttgcacaatgcgctgagcagtaccagtgaggaaatgcac
atagagctgacagatttcaccttgttgatcattgatgagtgccaccacacgcacaaagat
ggggtttataataaactaatggaaggttatcttgagagaaaaattcatcagaagggtaaa
ttgcctcaaatcctgggactcacagcttcccctggcacagggcgagcaacctcctttgaa
aaagccgtagaacacatattacagatctgtgctaaccttgatacttggagaataatgtca
gcagaagtccaccgtgaagacctggaagccaaagccaaacaacccaataagcagtatgat
cttgtaacagaaaggcctagggacccctttggagacaagctgaaggagatcatgaaaacc
atccatgagtatctgcgtatagaagatttctgtgaaagtgactatggaactcagacgtat
gagcagaaagtggttgaactggagaaagaaggagctgtggaggccaacaggatgaagcag
acgtgtgccttgcacttacgcaagtacaacgattccctactcgtacatgacacagtgaga
atgatggacgcgtatgaacttctggataacttctaccagacagagaaagtcattagaaaa
caaaacgacccaactgatgctttcctcatccaattatttgacagtaaccaagcaaggctg
ttagagctggccgaagacataagatttgaaaaccccaagcttacaaagctagaagaaata
ttggaagatcaattccagatctcctctggctcacgtgggatcatctttactcgcacacgg
cagagtactcactctctgcacaagtggatttctagcaaacattctttccagatcatggga
gtaaaaacagcacctttaactggagcagggtacagcaaccagagcaagcacatgacacag
aatgaacaacgtgaaactattgagatgttccgcaaagggcagctcaacctgcttatctct
actagtgttgctgaagagggcctcgatatcccacagtgcaatattgttgtgcgttatggc
ctaatgaccaatgagattgccatggtccaggccaggggaagagcaaggcgtgaggacagc
tgctattcttttctggcaaaaatgggtggaaaagaggttcgaagggaagaaaccaatgag
actcttgagggtctaatgaaaagggccattgaggctgtgcaaagaatgccagaacaagag
tatgagaaaaagaaagaagagctgcagaaggagtctcttatcacacgcaaggctaagcaa
gcaaagatagatgaaaaaaagaataaattctaccctgagcaagtgcgagtctactgtagg
tactgtagtcaagctgttgcccatggagatgattttcgtacaattaaaggagtccatcat
gtcaacatcaaccctgattttcgtgtatactatgaagtctgctctccgcctattgacttt
ggaaaaaagatggtggactggattccaggaggaaatatcagatgtcactgtggacaggaa
tggggttttgaaatgatttacaaacatgtgaattttccttctgtctccatcgacaacttt
gtggttgaaacaccagagagcaagagacactacggtcagtggaagaaagttcctttccca
gtgggcgagttgaactacagtctgtacatagagatgcaccctgaactgcttctgttagat
gactga
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