Xenopus laevis (African clawed frog): 108709830
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Entry
108709830 CDS
T01010
Symbol
smarcc2.S
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X3
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108709830 (smarcc2.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108709830 (smarcc2.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
108709830 (smarcc2.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108709830 (smarcc2.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108709830 (smarcc2.S)
PBAF complex
108709830 (smarcc2.S)
GBAF(ncBAF) complex
108709830 (smarcc2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM-assoc_3
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
108709830
NCBI-ProteinID:
XP_018105501
Xenbase:
XB-GENE-17339844
UniProt:
A0A8J0ULM5
LinkDB
All DBs
Position
2S:129069752..129110435
Genome browser
AA seq
1176 aa
AA seq
DB search
MAVRKKDGGPNVKFYEASDTVSQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPMKCFLDFKVSGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIYLHPDIDSKLQSKLKDIVKRHQGTVTEDKSHASHIVVP
VPSNLEDEEWVRPILKRDKQVLLHWGYYPDSYDTWVPASEVEASVEDAPTIEKPRKVHAK
WILDTDSFNEWMNEEDYELTDEKNPVVRRKKISAKTFTDEVSSPDSDRRDKKGPNYKKRK
RSPSPPPSAEAKKKAVKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTVTDLDEQEDESMEAVTKEEDENSSVNKGEQIKTSDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQQSSASQQLLNFPDKIKDKPSDLQNFGLRTDMYSKKNTTSKSKAAASATRE
WTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLA
YQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALDEFSKMKEEVPTALVEAHVRKVE
DAAKITGKADPSYGLESSGIAGTACEENERIDCPKMNTPEIHEDSSSDEPQTDVQPTEEK
KEPKDSPGETLPEDEGKERIGEVVKKEEEKSKDGDTDKESDKSDIDMADGEKVSDNKEGV
EETDKEEGGGKNKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQ
MKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQNFHMEQLKYAEIRARQQHFQQIQ
NQQQQQTTSSSQPVQATAHSIPVPQSSLTQAPVSSASSAESLGQPSAPTTQPPVSSQQQQ
GGTQPSPAQPSSTYTSQPPSTPLVSSAVAVPAQPPVPGNQHPSMHLPVQYNLPSELVDSA
HHNPPTNLYAPHHPMHGTFPPAACQVSGGPLTPHNPSIMVSSASNLPSNLGSAATQSPAI
VAAMQGGAALTTSPVQEPATPLPPDSIGNTVTQPQP
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggcccgaatgtgaaattttatgaggcatccgacact
gtctcacagttcgacaacgtgcggctttggctgggcaagaattataaaaagtatatccaa
gcagagcctcctactaacaagtcactgtccagcttggtggtacagctgcttcagttccaa
gaagaggtatttgggaaacatgtcagcaatgctcccctcactaaacttccgatgaaatgc
ttcttggactttaaagtgagcggagctctttgtcacatccttgctgctgcctataagttt
aagagcgaccagggatggcgaaggttcgattttcagaacccttcacgtatggatcggaat
gtggaaatgttcatgaccattgagaagtctctggttcagaacaattgcttgtcccggcct
aacatataccttcacccggatatagactcaaaactacagagtaagctgaaagacattgtg
aaacgacatcagggcactgtaacagaagacaagagtcatgcatctcacattgttgttcct
gtacctagcaatttggaagatgaggagtgggtgcgacccattcttaagagggataaacag
gttcttctgcactggggttattatcctgacagttatgacacgtgggttcctgcaagtgaa
gttgaagcctcagtggaagatgctcccacaatagaaaaaccacgcaaggtccatgccaaa
tggattctggataccgactcattcaatgagtggatgaacgaagaagactatgagttgact
gatgagaagaatcctgttgtacgacgtaagaaaatctctgccaagaccttcactgatgag
gtaagtagccctgactctgaccgcagagacaagaagggacctaactacaagaagaggaaa
cgctccccttccccacctcccagcgctgaagcaaagaaaaaggctgtcaaaaagggccct
tctaccccatataccaaatccaagaggggtcatcgagaggaggagcaagaggatctgaca
aaggatatggatgaaccctccccagtccctaatgtggaagaagttactctccctaaaaca
gtgaacaccaagaaggactctgaatctgcaccagtaaaaggagggactgtgacagacctc
gatgaacaggaggacgaaagcatggaagcagtgaccaaggaggaagatgagaactcatct
gtgaataaaggcgagcaaataaaaacctccgatcttcatgaggataatgtgactgaacaa
acacaccatatcatcatccctagttatgctgcttggtttgactataacagcgtgcatgct
attgaacgtcgggcattaccagagttcttcaatggcaagaacaagtccaaaacaccagag
atatacctggcctatagaaatttcatgattgacacctacagactaaaccctcaggaatac
ctaacttcaacagcatgtcgacgcaacttggcaggggatgtctgtgctatcatgagggtt
catgccttcctagaacagtgggggctcattaactaccaagtggatgctgaaagtcgacct
acgccaatgggtcctcctccaacatcacatttccatgttttagctgatactccatcagga
ttggttccgctgcagcctaaaacaccacagcagagctctgcttcacaacagttgctcaat
ttccctgataaaattaaggataaaccaagtgaccttcaaaactttggcttacggacagat
atgtatagtaagaagaacacaacatccaagagtaaggctgctgccagtgcaacacgtgaa
tggaccgagcaggagaccctgctgctccttgaggcactggaaatgtataaagatgattgg
aacaaggtatctgagcatgtgggaagccgaacacaggacgagtgtatcttgcatttctta
cgacttcccattgaggatccatatctagaggactctgaggcctctctgggaccattagct
tatcagcccataccctttagccaatccgggaatcctgttatgagcacagtagccttcctt
gcatctgtagtagatccacgggtagcatcagctgcagcaaaatcagctttggatgaattt
tccaagatgaaggaggaggttcccacagcactggtggaagctcatgtcaggaaggttgag
gatgcagctaaaatcactggaaaagctgatcccagttatggccttgagagcagtggtatt
gctggaacagcttgcgaggaaaacgagaggatagattgtcccaaaatgaacacccctgaa
atccatgaagacagcagttcagatgagccccagacagatgtacagcctacagaagagaag
aaagagccaaaggattcacccggtgaaacactccctgaagatgagggaaaggagagaatc
ggtgaagtagtaaagaaagaggaagaaaaaagtaaagatggagacactgacaaagaatct
gacaaaagtgatattgacatggcagatggagagaaggtctctgacaacaaggaaggagtg
gaggagacagacaaggaagagggtggtggaaagaacaaggttgaaagagacattggagaa
ggcaatctttctacagctgctgccgcggctctggctgctgctgctgtaaaggcaaagcat
ttggcagcagtggaagaaaggaagataaaatctcttgttgcacttctggtggaaacccag
atgaagaagctggaaatcaaactgagacattttgaagagttggagaccatcatggataga
gaaagggaggcgctggaatatcagagacagcaacttctagctgataggcagaactttcac
atggagcaactgaaatatgctgagatacgagcccgtcaacagcactttcagcagatccaa
aaccagcagcagcagcagaccacttccagcagtcagcctgtgcaagccactgcccattcc
attccagtgccacagtcatccctaactcaagccccggtgagctcagccagcagtgctgaa
agtctgggtcagccttcagcaccaaccacacagccacctgtcagtagtcagcaacagcaa
ggaggaacacaacccagcccagcacaaccttctagcacatatacaagccaaccgccatct
accccactggtttcatcagcagtagcggttcctgcccagccaccggtgcccggtaatcag
caccccagcatgcacttacctgtccagtataatctgcctagtgaattagttgactctgct
catcacaatccaccaactaacctgtatgctcctcaccatcccatgcatggcaccttcccc
cctgcagcttgtcaggtcagtgggggcccccttactccacataacccttccattatggta
tcctcagcttctaacttgccgtccaaccttggttcagctgccacacagagtccagccatc
gtagctgcaatgcagggcggggctgccctcactaccagtcctgtgcaagaacctgcaaca
cctctgcctccagactccattgggaacacagtaacccagccccaaccatag
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