Xenopus laevis (African clawed frog): 108712364
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Entry
108712364 CDS
T01010
Symbol
pdzrn4.S
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108712364 (pdzrn4.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108712364 (pdzrn4.S)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
108712364 (pdzrn4.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
COX7B
Motif
Other DBs
NCBI-GeneID:
108712364
NCBI-ProteinID:
XP_041444511
Xenbase:
XB-GENE-17333031
UniProt:
A0A8J1MSS7
LinkDB
All DBs
Position
3S:83203139..83283309
Genome browser
AA seq
771 aa
AA seq
DB search
MGCNLCSFQKREEHYKLLYEVAQVNGKDLSKVSHEEAVEAFRNAKEPIVVQVLRRAPINK
AHRSLQEAQLVNVSTQTDITFEHIMALAKLRPTTPPVPDICPFLLSDSCHSLHPMEHEFY
EGNEYLSSLPTDGDKTEDFEYEEIGLCRINSQDRLGLTVFYRTDDEDDTGIYVSEVDPNG
TAARDGRIREGDRILQINGQDIQNREEAVALLFSDKCKRIILMVARPELPLDEGWIDDER
HEFLEELNNQKLEEQHNEAMQYKANEVQQQKKPEIEDGTTDTATSSSNNHEKDSGLGRTD
ESQRNDESSELENTTGYQTNTSLLMPRDLRPGQESLGSIELHCNESFISGEYIDSDSVGN
PDEDCERFRQLLELKCRIKNRGEYDLYYSSSTIECSRSDHGGVEHELQLLNEELRNIELE
CQSIMQAHQRQNNKKQQEDNHDDEVRSTTSSTSINLQKGNLSDITDHPERSDKDSSSAYN
TAESCRSTPLNIDRSPDSSLQRIISITNKKNRRSTIVTNHFSSGINSIENSPSKSIASAQ
KIIHEFQDTKLQCSQLSAQKDQSIEEIHYLSPYHSSGYKFGNVPVHARHYQSYMQLIQQN
SAVEYTQSQLNFVAQRITEPRMEWKVKIRSDGTRYITKRPIRDKLLKERALKIKEERSGM
TTDDDTMSEMKMGRYWSKEERKQHLMRAKEQRRRREFMMRSRLECLKESPQNGSESKKEV
SIIELSHKKMMKKRNKKILDNWMTIQELMTHGEKSPEGNRVHNAFLSVTTV
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcagttttcagaaaagagaggagcactacaaactgctgtatgaa
gttgcacaggtcaatggaaaggatctttccaaagtttcccatgaagaagcagttgaagcc
tttcgtaatgctaaagaaccaatcgtagtccaggttttaaggagagcccctataaataaa
gcccacagaagcttgcaggaagctcaactggtgaatgtcagcacacagacagacattacc
tttgagcacatcatggctttagcaaaactccgaccaacaacaccaccagttcctgatatt
tgtcctttcttgctttccgacagctgccattctcttcatccgatggagcatgaattttat
gaaggtaatgagtatctttccagcctgcctactgatggggacaaaacagaagactttgag
tatgaggagattgggttgtgccgcattaacagtcaggatagactgggccttacagtcttc
tacagaacagatgatgaagatgataccggaatatatgtcagtgaggttgatccaaatggt
actgcagctagagacgggcgaatccgggaaggagacagaattttacagattaatggccaa
gatatccagaacagagaggaggctgtggcattactcttcagtgataaatgcaagagaatc
attctgatggtagcaagaccagaattaccgttggatgaagggtggatagacgatgaaagg
catgaattcttggaggagttaaacaaccaaaaattggaagaacaacataacgaagcaatg
caatacaaagctaatgaagtgcaacagcaaaaaaagccagaaatagaggatggcaccaca
gatactgcaacctcttcatctaacaaccatgaaaaagacagtggcctggggcgtactgat
gaaagtcaacgtaatgatgagagttctgagctggaaaatacaacagggtaccaaaccaac
acatcactcctgatgccaagagatttaaggccaggccaagaatcattaggaagcattgaa
cttcactgcaatgaaagttttatttctggagaatacattgattctgattctgtgggcaac
ccagatgaggattgtgaaaggtttcgccaactgttagaacttaagtgcaggatcaaaaat
agaggggaatatgacctttattattccagcagtaccattgaatgtagcagatcagaccat
gggggtgtagagcatgaactacagctcctaaatgaagaactgagaaatattgaacttgaa
tgtcaaagcattatgcaggcacatcaacgacagaataacaagaagcaacaagaagataac
catgatgatgaggtgagaagtaccaccagcagcaccagcataaacttacagaaaggaaac
ctcagtgatatcacagatcatcctgaacgatccgataaggacagctccagtgcatataat
acagctgagagctgcaggagtactcctctgaatatagatagatctcccgatagctccctt
cagaggatcattagcataactaacaaaaaaaatcgtagaagtactatcgtaacaaatcat
ttttcctctggaataaatagcattgaaaattccccatccaaatctatagctagtgcgcag
aaaattatacatgaatttcaggatacaaagttacaatgcagtcaattgtctgctcaaaaa
gatcaaagcatagaagaaatacactacctttcaccttaccacagctccggatacaaattt
ggaaatgtgccagttcatgcgagacattatcaaagttacatgcaacttatccaacaaaac
tctgctgtagaatatacacaaagtcagttaaactttgtagcacaaaggataacagaacca
aggatggagtggaaagttaaaatcagaagtgatggaacaaggtacattactaaaaggcca
atacgtgacaaacttctgaaagagcgtgccttaaaaatcaaagaggagcgtagtggtatg
actacagatgatgatacaatgagtgaaatgaaaatgggccgttactggagcaaagaggag
aggaagcagcaccttatgagagctaaggaacagaggagaagaagagaattcatgatgcgt
agcaggttggagtgtctaaaagagagccctcaaaatggaagtgagagcaaaaaggaagtc
agtattattgaactaagtcataaaaaaatgatgaaaaaacgaaacaaaaaaattttggac
aattggatgacaatccaagaactaatgacacatggcgaaaagtcccctgaaggaaacaga
gtacacaatgcctttctatcagtcacaaccgtttga
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