Xenopus laevis (African clawed frog): 108715422
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Entry
108715422 CDS
T01010
Symbol
dhx38.S
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108715422 (dhx38.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108715422 (dhx38.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108715422 (dhx38.S)
Spliceosome [BR:
xla03041
]
Complex C
Other components
Step II factors
108715422 (dhx38.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
T2SSE
nSTAND3
SRP54
PhoH
AAA_30
AAA_7
AAA_16
Motif
Other DBs
NCBI-GeneID:
108715422
NCBI-ProteinID:
XP_018116029
Xenbase:
XB-GENE-17336232
UniProt:
A0A1L8GF21
A0A974CYK7
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All DBs
Position
4S:41877299..41894749
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AA seq
1211 aa
AA seq
DB search
MEDDLSLHRLEGSDPSLETGGLVIKKKSSINEQHVFKAPAPRSSLLGLDLLAAQKRKERE
EKEQQEGEKKPKVSSRDSEEKDRSSDRPNDKLSRGSHGDRHYRTARVETPSYTGGVNEEF
LARNRQRERERREHGVYASSKDDRQRRKDRGREREDRSHRNRSERDSGSERSARRSEPES
PRHRARDASTPSRSNWEEDDSGYGGSQRSQWESPSPAPSNKDSERSHRSERESSRRERSE
RGRYSEESPLPTPSYKYNEWASDRRHLGSTPRLSQGRGKQDNEDDKINFISEEEQQQWED
DQRQADRDWYMMDEGFDESHNALTSSSEDYVKKREQQLQKQSTKRVSAQRRQINEDNERW
ETNRMLTSGVVQRLEVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVRDAT
SDLAIIARKGSQLVRKHREQKERKKAQHKHWELAGTKLGDIMGVKKQADESDKPVAEDGG
VDYKTEQKFADHMRERSEASSDFSRKKSLMEQRQYLPIFAVQQELLTIIRDNSIVIVVGE
TGSGKTTQLTQYLHEDGYTDYGMIACTQPRRVAAMSVAKRVSEEMQVSLGEEVGYAIRFE
DCTSEKTLIKYMTDGILLRECLRESDLDNYSAVIMDEAHERSLNTDVLFGLLREVVTRRS
DLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHL
SGAAGDILIFMPGQEDIEVTSDQIVERLEELDSAPPLAVLPIYSQLPSDLQAKIFQKAPD
GVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGR
AGRTGPGQCYRLYTQSAFKNELLHTAVPEIQRTNLSNVVLLLKSLGVQDLLLFHFMDPPP
EDNMLNSMYQLWILGALDNTGALTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILIVVS
MLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVFLQWKNNNYSSGWCNQHFIHAK
AMRKVREVRAQLKDIMVSQRMSLSSCGSDWDIVRKCICAAYFHQAARLKGIGEYVNVRTG
MPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSIKHAGK
SRQENKRRAKEEVSAMEEEMMLAEEQLRSRREEQQKKNVLGSARSLKIYTPGRKDQVEPG
TPRRTPARFGL
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatctctctctgcacaggctggaaggcagtgacccgtctctggagactggg
gggttagtaataaagaagaagagttccatcaatgagcagcatgtgtttaaagcaccagcc
ccacgctcctcactgcttggcctggacctgcttgctgctcagaagagaaaagaaagggaa
gagaaagaacagcaagaaggagaaaagaaacccaaagtctcttcaagggattcggaggag
aaagaccggtcttcagacagacctaatgataaactgagtcgggggagtcatggagacaga
cattacaggacagcacgtgtggagactccatcatacactggtggtgtaaatgaggaattc
ttggctcgtaaccgtcagagagaacgtgaaagacgagagcatggggtatatgcgtcatcc
aaggatgatcggcagagaagaaaggatcgtggtagagaaagagaggatcgcagccaccgt
aacaggtcagagagagacagtggatcagagagaagtgcaaggcgcagtgagcctgagagc
ccaaggcacagagctagagatgcatcaacaccctctcgctcaaattgggaggaagatgat
agtggatatggagggtctcagcggtcacagtgggagtccccttctcctgcaccatcaaac
aaagattctgaaagaagtcatcggagtgaacgtgaaagttcaagaagggaaaggtcagag
aggggtcggtatagtgaagaatctccccttccaactccatcttacaaatacaatgaatgg
gcctctgatcgacgacatcttggatccacccctcgtctgtctcaaggcagagggaagcaa
gacaacgaggatgacaagattaactttatatccgaggaggagcaacagcaatgggaggat
gatcagcggcaagcagatagagactggtatatgatggatgaaggatttgatgagtctcac
aatgcgctgacttcttcctctgaagactatgtaaagaaacgggaacagcagctccagaaa
caaagcactaaaagggtgtctgctcagaggaggcaaatcaatgaggataacgagcgttgg
gaaacgaaccgcatgctaaccagtggagtagtacagaggctagaggttgatgaagatttt
gaggaagacaatgcagcaaaagtgcatctccttgtgcataatctggtgcctcccttcctg
gatggtcgcattgtatttaccaaacagccagaaccagtgattccagtgcgtgatgcaact
tctgatttggcgattattgcccgcaaaggcagtcagctggttcgcaagcaccgtgagcaa
aaggagcgtaaaaaggctcagcacaagcactgggaattggctggaacaaagcttggagac
atcatgggtgttaagaagcaagctgatgaatctgacaagcctgttgcagaggatggagga
gttgattacaagacagagcagaagttcgccgaccacatgcgggagcgcagtgaggcaagc
agtgacttctcccgcaagaagagtctgatggagcagaggcagtacttgcccatatttgcg
gtacagcaggaactacttaccatcataagagataatagcatcgtcattgtggtgggggaa
accggtagtgggaagactacccaactcactcagtacctgcatgaggacgggtatacggat
tatggcatgattgcctgcacccagccccgccgagtggcagccatgtctgtggcaaagcga
gttagtgaagaaatgcaagtgagccttggagaagaagtgggctatgctatccgatttgag
gactgcacttcagagaaaactcttattaagtacatgacagacggcatactgttacgtgaa
tgtttgcgtgaatctgaccttgacaactacagtgctgttattatggatgaagcccatgaa
cggtcattaaacacagatgtgctgtttgggctcctgcgggaggttgttacccgacgctct
gatttaaagttgatcgtgacttcagccactatggatgccgagaaatttgcagctttcttt
ggcaatgttccaatttttcatataccaggacgtacattccctgtggacatcctgtttagc
aagactccccaggaggattatgtggaagctgctgtaaaacaagctctacaaatccactta
tcgggagctgcaggtgacatactgatcttcatgcctggtcaggaggacattgaggtgaca
tcagatcagattgttgaacgtttggaggaactggacagtgcaccacccctggctgtgtta
ccgatctactctcagttaccatctgacttgcaagccaagatcttccagaaggctccagat
ggtgtgagaaaatgcattgtggccacaaatattgcggaaacatctctgactgtagatggc
ataatgtttgtgatagattcaggctactgcaagttaaaggtgtttaatccccgaattgga
atggatgctctgcagatataccctattagccaggcaaatgccaaccagcgctcaggaaga
gcaggcagaacaggccctggacaatgctataggctgtacacacagagtgcctttaagaat
gagctgctccacactgcagttcctgaaatccagcgcacaaatctctctaatgtggttctg
ttgctcaagtcactgggggttcaggatttgcttctctttcatttcatggatcctccccct
gaggacaacatgttgaattccatgtaccagctctggatccttggtgctcttgataatacc
ggtgccctcacatctactggtcggctcatggtagaatttcctttggacccagctctctcc
aaaatgcttattgtgtcctgtgatatgggctgcagttctgaaatccttattgtggtgtct
atgctgtctgtgccagcaatattttatagaccaaagggtcgtgaggaggagagtgaccag
atcagagagaagtttgctgttccagagagtgaccatttgacgtatctgaatgtcttcctg
cagtggaagaacaataattactccagtggctggtgcaaccagcacttcatccatgccaag
gccatgcggaaggttcgtgaagtccgggcacaattgaaagacatcatggtttctcaaaga
atgtctctctcctcctgtggttcagactgggacattgtcagaaagtgcatttgtgcagct
tattttcaccaggctgcaaggcttaaggggattggagagtatgtgaatgtacgaactggg
atgccatgtcatcttcacccaactagttcactgtttggcatgggatataccccagattac
attgtttaccatgagctggtgatgaccacaaaggaatacatgcagtgtgtcacagctgtg
gatggagaatggctggcagagttgggtccaatgttttatagtattaaacatgcagggaaa
tcgagacaggaaaacaagcggcgtgcaaaggaggaagtatctgctatggaggaggaaatg
atgttggcagaggagcagcttcgttccaggagagaggagcagcaaaaaaagaatgttctt
ggtagtgcaaggtctttgaaaatatacacaccaggaaggaaggatcaagtagaacctggg
acaccccgccgaacacctgcacggtttgggctttga
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