Xenopus laevis (African clawed frog): 108716928
Help
Entry
108716928 CDS
T01010
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X1
KO
K24340
collagen type XIX alpha
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108716928
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108716928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108716928
NCBI-ProteinID:
XP_041419084
UniProt:
A0A8J1KS74
LinkDB
All DBs
Position
5L:complement(97690432..98033854)
Genome browser
AA seq
1128 aa
AA seq
DB search
MDYIILWMLYFGMKILFPVTSSMALSNRTVCPILRTDGVDSKQIYKQVVDMSGYDLAERF
SLRQISCGSEHTCFKLGSTPLIKDTMQLFPNGLPDEYSFVATFRVRRTTKKERWFLWQTM
SRFGNPQDSILIDGNKKVVEFTTKHNGVITLQYTFKSRELHLLFDRQWHKLGLSIESKII
SLYIDCKLIERRQTDRKDGIDMQGSSVITTRASDGKPADIELQRITIYCSPKRAAQQNCC
EISDGMCPSQESLQTTASAIVAQKINSLQSKEVIAKDKCPCLPHKGDPGLPGVAGLPGQK
GENGLQGEKGSKGEIGIPGQIGDKGEEGTSGLAGLQGERGQDGSKGEKGEMGQKGDQGEL
GPIGLPGKDGLDGKPGIHGSIGPKGEKGESGPPGLAALPIVAGGIKGDKGSIGPEGLQGP
PGNEGQRGRRGKPGPPGNPGPSGPPGVPGESGPSGMKGDRGDVGLRGLPGLPGLVGSVSK
GEPGETGNNGEQGVKGETGNPGLPGMTGLPGIQGQKGEPGANGLTGEMGLPGEHGVVGKQ
GVKGEKGEAGGIEGPPGPPGPKGDTGPPGAGLQGEPGPSGTSGAPGPRGPKGERGLPGVQ
GLPGEVGPPGTGIEGPQGPRGPPGEHGIQGPRGLPGVPGLPGAEGVPGRDGRPGLPGPPG
DPIALPLLGDIGAVLKNVCSHCQIGGPGVTGIKGEKGDDGIPGQHGVKGDPGPRGPSGIP
GKEGPKGIKGERGFPGLSGEKGDQGMQGIPGLPGLIGPSGPSGHFGRPGHPGPAGHKGEK
GNEGSPGIPGPPGPPGIPVPERNGMGSLYKLQGAASAVYMGPPGPPGPKGDQGPMGEAGP
MGLPGLEGLPGEKGERGQIGPPGIAGTPGRNGAPGPPGYPGESGERGPVGDIGFPGPEGP
AGLPGKNGNDGLPGSVGAPGRPGDRGPKGERGDPGIPGDQGPQGERGKPGPYGYKGDMGS
EGPQGPPGERGYQGIPGNNGHPGPPGQPGISAENILFEEMKRYIRQEVLRIFEDRMAELL
SQLKTPAALLAAQGHGKPGPPGNDGLPGPPGDPGPPGHQGLRGQKGERGEFGIGLPGSPG
PAGPTGMPGSPGTQGPSGPSGPPGIGGRCNPVDCYYPLSHGRSRLNGK
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atggattatataattctttggatgctttactttggaatgaaaatccttttccctgttact
tcatcgatggcactgtcaaaccgaacagtttgtccaattttaaggactgatggagttgac
agtaaacaaatatacaagcaagttgttgatatgtcaggctatgaccttgctgaacgtttt
tctcttagacagatttcatgcggcagtgaacacacatgttttaaacttggaagtacgccg
cttattaaagacacaatgcaactttttccaaatggacttccagatgaatattcttttgta
gccacattccgtgtaaggcgaactaccaaaaaagagcgatggtttttgtggcaaacaatg
tcccgctttggcaatccccaggattccattctaattgatggcaacaagaaagtagtggag
tttacaactaagcacaatggagtaatcactttacagtacacatttaaaagccgtgagctt
catcttctctttgatcgtcaatggcacaaacttggactcagcatagaatccaagattatt
tctctttatattgactgcaagctaattgaaagaagacagactgataggaaggatggtatt
gacatgcaaggcagttcggttattacaacacgtgcctctgatggcaaacctgctgatatt
gaactccaacgaataacaatttactgcagcccaaagcgtgcagctcaacaaaactgctgt
gagatatctgatggaatgtgtccatctcaggaaagccttcaaaccactgcttcagcgatt
gtagctcagaagataaattcccttcagtcaaaagaagtgattgccaaagataagtgcccc
tgcttgccacataagggtgatcctggtttgccaggagttgcaggcctaccagggcagaaa
ggagaaaatggactccagggcgagaaaggaagtaagggagaaattggtatccctggacag
attggagacaagggagaagaaggcacaagtgggcttgctggactccagggagaacgaggt
caagatggaagcaaaggagagaaaggagaaatgggtcaaaaaggagatcaaggagaactt
ggacccattggcctacctgggaaagatggcttggatggcaaaccaggcattcacggttca
attggccccaagggagaaaagggggaaagtggaccaccagggctagctgcattaccaatt
gtagctggtggcataaaaggagataagggatctattggtccagaaggtcttcaaggtccc
ccagggaatgaaggtcaaaggggaagaagaggaaaacctgggccccctggcaatcctgga
ccctctggacctcctggagtgcctggagagagcggacccagtggcatgaaaggggacagg
ggggatgttggtctaagaggattgcccggcctgccaggactggttggctctgtctcaaag
ggggaaccaggggaaactggcaacaatggagagcaaggtgttaagggagaaactggaaat
ccaggattaccagggatgactggcctcccaggaatacagggtcaaaagggggagcctggt
gcaaatggactaacaggggaaatggggttaccaggagaacatggcgttgttgggaagcag
ggtgttaaaggggaaaagggagaggctggtggtattgaaggacctcctggtcctcctggt
ccaaaaggtgatacaggaccaccaggagctggtttacaaggtgagccgggaccaagtgga
acctctggtgcacctggccctaggggccctaagggagaaagagggttgccaggtgttcaa
ggattgcctggagaagttggaccacctgggactggcatagaaggtcctcaaggaccaaga
ggtccaccaggagaacacggtatccagggtccacgaggtcttcctggagtgccaggactt
ccgggtgcagagggtgtccccggcagagatggaaggccaggattgccagggcctccaggt
gacccaattgcacttccacttcttggtgacattggggcagtgctaaagaatgtttgtagc
cactgtcaaattggtggcccgggtgttacaggtattaaaggcgaaaaaggggatgatggg
attcctggacagcatggagttaagggtgatcctggtccaaggggcccttcaggaatacct
ggtaaagaaggaccaaagggaatcaaaggtgaacgtggattccctggactctctggagaa
aaaggcgatcagggaatgcaaggtattcctgggcttcctggcttgataggaccttctgga
ccatcaggtcattttgggagaccaggacatccagggccagccggccacaaaggagaaaag
ggtaatgaaggttctcctggaattcctggacctcctgggcctcctggcatacctgttcct
gaaagaaatggaatgggaagtctatataaattacagggagctgcatctgctgtctatatg
ggaccacctggtccacctggtccaaaaggtgaccaaggtcctatgggagaagcaggccct
atgggattgccaggcttggaagggctcccaggagaaaagggagaacgaggacaaattggc
ccaccaggaattgctggcacaccagggagaaatggagccccaggtcctccaggatatcca
ggtgaatcaggcgaaagaggtccagtaggagatattggtttccccgggcctgaaggacct
gctggattaccaggaaagaacggaaatgatggattaccaggttcagtgggagcccccgga
cggccaggagacagaggcccaaaaggagaacgtggtgacccaggtataccaggtgaccaa
ggtccacaaggagaaagaggaaaaccagggccatatggctataagggagatatgggatct
gagggaccacaaggacctcctggagaaagaggataccagggaattccaggaaataatggg
catccaggaccacccggtcaaccaggaatttcggcggagaacattttatttgaagaaatg
aaaagatatattagacaagaagttttgagaatatttgaagacagaatggctgaattgcta
tcccagctgaagacaccagctgccttacttgctgctcaaggccatggcaaaccaggtcca
ccaggaaacgatggactgccaggacctcctggagatcctgggcccccaggccaccaagga
ttaagagggcagaaaggtgagagaggagaatttggcattggtcttcctggaagtcctggt
ccagcaggccctacaggtatgcccggttcacctggaactcaaggaccttctggaccttca
ggacctccaggcataggaggaaggtgtaatccagtggattgttattatcctctatcacat
ggtcgatcacgactcaatggaaaatga
DBGET
integrated database retrieval system
