Xenopus laevis (African clawed frog): 108717867
Help
Entry
108717867 CDS
T01010
Symbol
scaf8.S
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108717867 (scaf8.S)
03041 Spliceosome [BR:
xla03041
]
108717867 (scaf8.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108717867 (scaf8.S)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108717867 (scaf8.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
Motif
Other DBs
NCBI-GeneID:
108717867
NCBI-ProteinID:
XP_041420423
Xenbase:
XB-GENE-17339760
UniProt:
A0A8J1KUJ1
LinkDB
All DBs
Position
5S:44638376..44704186
Genome browser
AA seq
1286 aa
AA seq
DB search
MEAVKTFNSEGRHQGIEVPLYRTSQLFSLNDYKPPISKAKMTQITKSAIKAIKFYKHVVQ
SVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQDKDLFAPRFSNNIINTFHNLYRCPAD
EKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLPSTTAAMSNTPGTPVTPV
TPANIVQGIPDPWIAQINNTDTLAAVAQILQSPQGQQLQQLVQSLHIQQQKPQPSLLQAL
DAGLVVQLQALTAQLTAAASSSNPLNQLEQSVSLSKKLMDRFDFGDDSNQPEDTKKETQQ
IPLIPESVNNSIFHQLAEHLQQQNLEHLRQQLLEQQHSTKVTAQENQDFMSESENSATPS
QDDSQQPFLESESQMHSSMNMQQEDMEIEETLDENEEIFEKEEKKIMKQERPRTRSKSRS
RSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKTSRSYSSERRAREREKERQKKGLPPIR
SKTLSVCSTTLWVGQVDKKATQQDLTNVFEEFGQIESINMIPPRGCAYVCMVHRQDSYRA
LQKLSSSSCKIGSKIIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGG
MIDQESVNNEWKAQKSSEAAAGAKEPTPDLATVAPTTIVTSAPTPVATTTAQSSVVQKNS
AVISQPEAYTQPVAVLQIPVAPAVSLVPPAFPVSMAVPPPGYSAIPPPPFMRASFNPSQP
PPGFIPPPLPPPAIPPPALSSALPAATQSTVTSNIGILGLQPPSPITASLPHVNIPTRMT
GMPLLDVCQGLLSQTASARFTLLHPGIPPLPPPPRSMLPPGLIDIHPLPFPLGEMVSLPD
RSLGVQSRLDSDTVNVKEKRQTVSSSSIQEGDQDYRFPPVENRQNSSKPSTEKHGSEAMP
SAGNKEMQSVRITDESVQARNADDDHEPQDMAVVDSSESQEKSMEETSVAHLSSEELHKD
ERKSEADAFEGLRQPVQQGYDHKGTNILDAHDGQVRQPLNDKQFRGPTIDILSPFQSYPS
DRDIFARPPLGSRDHFGMPYIETHDRFGRPSMENPFRQPILDGRNHYGRPPMDGRDHFRR
PPPDIRENHGRTFVDIAGKQLHFPLEKPWGHQEDFDERPHHSFTGFQGLKGFHDERHHHG
NFRQEHRNTPNWNRGFEQATHRDFDDRRHSWERQVDRDERDFDFRREVNGDPFERERQSD
NRVPPQPQTHIFEYFPEATSTQNTSKPQVNGENTENSNQKETVSKSDDLEPCEQKETSVK
EGEENDIKETETESQIVVESTDTEGT
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaaacctttaacagcgagggtcgacatcagggtatagaagtgcccctt
tatcgtactagtcagctattttcactgaatgactacaaaccacctatttctaaagccaaa
atgacccagataaccaagtctgcaatcaaagctattaagttttacaagcatgttgttcag
agcgttgagaaattcatccagaagtgcaagccggaatataaggtccctgggctgtatgtc
attgattcaatagttcggcaatccagacatcagtttggtcaagataaagatctttttgcg
cctcgttttagcaataacataattaatacttttcataatctgtaccgttgtcctgctgat
gagaagagcaaaattgtaagagttctgaatctctggcagaagaataatgtgtttaaaagt
gaaattattcagccacttctcgatatggctgctgggatccctcctccagttgttactcca
gtcttacctagtactactgctgcaatgagcaacactccaggaacgccagtaaccccagtt
acaccagcaaatattgttcagggaattcctgatccgtggattgcacagataaacaacaca
gatactcttgctgccgtagcacaaattctgcaaagccctcaagggcaacagcttcaacag
cttgtacagtctttgcacatccaacagcaaaagccgcaaccttctcttctacaagccttg
gatgctggtcttgtggttcaactgcaggcacttacagctcaacttacagcagcggcttca
tcttctaatcctctcaaccaactagaacaaagtgtttctctcagcaagaagttaatggat
aggtttgattttggagatgactctaaccagccagaagatacaaaaaaggagacccaacaa
atccctctgattcctgaatctgtgaataactcaattttccatcaacttgcggaacatttg
cagcagcaaaatcttgagcatcttcgacagcaattattggagcagcaacattctacaaag
gtaacagctcaggaaaatcaggactttatgtctgaatcagaaaactctgcaacaccttcc
caggatgacagccaacagccatttttggagtctgaatcacaaatgcatagctccatgaac
atgcaacaagaagatatggaaattgaggaaacactggatgaaaatgaagagatatttgaa
aaagaagaaaagaagataatgaaacaagaaagacctaggacacgttcaaagtctcgctca
aggtcaccaaggaaaagacgatcacgatctaggtctggatccaggaagcgcaagcataga
aaacgctcacggtcgcgatctagggagagaaaacgcaaaacatcccgctcatattcaagt
gaaaggagggcaagagaacgagagaaagaacgacagaaaaaaggcctccctcctatcaga
tccaaaactcttagtgtctgtagcactacactctgggttggtcaagttgacaaaaaagcc
acacagcaggatttgacaaatgtatttgaagaatttggacagattgaatcaataaatatg
attccaccaaggggctgtgcatatgtctgcatggttcatagacaagattcctaccgggct
cttcagaagcttagctctagctcttgtaaaattggatccaaaatcattaagattgcttgg
gctttgaacaaaggtgtgaaaacagaatataagcaattttgggatgttgatcttggagta
acatatataccatgggaaaaagtcaaggtggatgacttagaaggatttgctgaaggtgga
atgattgatcaggagagtgtgaataatgagtggaaagcacagaaaagttctgaagcagca
gcaggtgctaaagagcccacacctgatcttgccacagtagctcccactaccattgtcact
tctgctcccactccagttgccaccacaacagcccagtcttcagtcgttcagaagaattct
gctgtaatctcacagcctgaggcatatactcagcctgttgcagtgcttcagatcccagtt
gctccagctgtaagcctagttccgccagcatttcctgtctcaatggctgtgcctccacca
ggctattctgcaattccaccacctcctttcatgagggcttcttttaatccttcgcagcca
ccaccaggttttattccaccacctcttcctccccctgctattcctcctccagctcttagc
tcggcacttccagcagccactcaaagtacagtgaccagcaacattgggatattaggtttg
caaccaccatcacctattacagcaagcttgcctcatgtaaacatccctactagaatgacg
ggtatgcctctattggatgtttgtcaagggttactttcacagacagcatcagcaagattc
actttgttacatccaggaatacctccacttccaccaccaccaagaagtatgctccctcca
ggactgattgacattcatccattgcctttccctctaggggaaatggtttctcttcctgac
agatctcttggagtccaaagcagattagattctgataccgttaatgttaaagaaaagagg
cagactgtgtcaagcagtagtattcaggagggggatcaagattatcggtttcctccagtt
gaaaaccgtcaaaattcaagtaaaccatctacagaaaaacatggaagtgaggcaatgcca
agtgcaggtaacaaagaaatgcaaagtgtaaggattacagatgaaagtgttcaagctaga
aatgcagatgatgaccatgagccacaggacatggccgttgtagactcctctgaaagtcaa
gaaaagtctatggaggagactagtgtagctcatttatccagtgaggagttacataaagat
gaaaggaagtctgaagcagatgcctttgaaggtttaagacagccggtccaacaaggatat
gaccataagggaacaaatattctggatgcgcatgatggccaagtcaggcaaccactaaat
gacaaacaatttagaggcccaacaatagacatattatcaccatttcaaagttatccaagt
gatagagatatttttgctcgaccacctttagggagtagggatcactttggaatgccatat
atagagacacatgatcgttttggcaggccttctatggaaaatccttttagacagcctatt
ttagatggcagaaaccattatgggaggccaccaatggatggtagagatcattttcgaaga
ccgcctccagatataagagagaatcacggaagaacatttgtggatattgctggtaagcaa
ttacatttcccattagaaaaaccatggggacatcaggaagattttgatgaaagaccccac
cattctttcactggttttcaaggactaaaaggctttcatgatgaaaggcatcatcatgga
aactttaggcaggagcatcgaaatactccaaattggaatagagggtttgaacaagctaca
catagagattttgatgaccgtcgccactcatgggaaagacaggttgatagggatgaacga
gattttgatttccgtagagaagttaatggtgacccttttgaaagagagagacagtcagac
aacagggttcctccacagcctcagacacacatttttgagtatttcccagaagcgacttct
actcaaaacactagcaagcctcaagttaatggagaaaatacagagaatagcaatcaaaaa
gaaactgtaagcaaatctgatgatcttgaaccctgtgaacagaaagaaacttcagttaaa
gagggtgaagagaatgacatcaaggaaactgaaacagaaagtcaaattgtggttgaaagc
acagatactgaagggacataa
DBGET
integrated database retrieval system
