Xenopus laevis (African clawed frog): 379116
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Entry
379116 CDS
T01010
Symbol
ubtf.S, ubf, ubf1, ubf2, ubtf, ubtf-a, ubtf-b, xUBF, xUBFbeta2
Name
(RefSeq) nucleolar transcription factor 1-B
KO
K09273
upstream-binding transcription factor
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
379116 (ubtf.S)
03021 Transcription machinery [BR:
xla03021
]
379116 (ubtf.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
379116 (ubtf.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
379116 (ubtf.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_5
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
379116
NCBI-ProteinID:
NP_001079429
Xenbase:
XB-GENE-966569
UniProt:
P25980
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All DBs
Position
9_10S:4851041..4872102
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AA seq
701 aa
AA seq
DB search
MNGAAGGDTQGKMTAPKDQDQWSQEDMLTLLHTMKTLLPGQDNSKFKTTESHLDWNKLAF
KHYSGSMCRQKWMEISNEVRKFRTLTELILDADEHVRHPYKGKKLKKHPEFPKKPLTPYF
RFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQDFERNMAKFR
EEHPDLMQNPKKSDVPEKPKTPQQLWYNHERKVYLKLHADASTKDIKDALGKQWSQLPDK
KRLKWIHKALEQRKQYEGVMREYMQKHPELNITEEGITRSTLTKAERQLKDKFDGRPTKP
PPNSYSMYCAELMANMKDVPSTERMVLCSQRWKLLSQKEKDAYHKKCEQRKKDYEVELMR
FLENLPEEEQQRVLAEEKMVGMKRKRTNTPASKMATEDAAKVKSRSGQADKKKAAEERAK
LPETPKTAEEIWQQSVIGDYLARFKNDRAKALKVMEATWLNMEKKEKIMWIKKAAEDQKR
YERELSDMRSTPAPTTAGKKVKFLGEPKKAPMNGYQKFSQELLSNGELNHLPLKERMAEI
GSRWHRISPTQKDYYKKLAEDQQRLYRTQFDTWMKGLSTQDRAAYKEQNTNKRKSTTKIQ
APSSKSKLVIQSKSDDDEDDEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEE
NEDEEDEEEDDEDNEEDDDDNESGSSSSSSSSADSSDSDSN
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaacggagctgctgggggtgatacacaaggaaaaatgactgccccaaaggatcaagat
caatggtcccaggaggacatgctgactctcctccacaccatgaagactctcctccctggc
caggacaactccaagtttaagaccaccgagtcccacctggactggaacaaactggccttc
aaacattattctggttccatgtgtcgccagaagtggatggagatttccaacgaggtaagg
aagttccggactctgacagagttgatcctggatgcagacgaacacgtgagacatccctac
aaaggcaagaagctgaagaaacacccagagttccccaagaagccgctcaccccttacttc
cgcttcttcatggagaagagagctaaatatgccaagctgcaccccgagatgagtaatctg
gatctcaccaagattctgtccaagaaatacaaagagctgccagagaagaaaaagatgaaa
tacatccaggacttccagagggagaagcaggactttgagaggaacatggctaaattcagg
gaggagcatcctgatctcatgcaaaatccaaagaaatctgatgtcccggagaagcccaag
acccctcagcagctgtggtacaaccatgagaggaaggtctacctgaaactgcatgctgac
gccagcacaaaagacattaaagatgcattagggaagcagtggtcccagttacccgataag
aagcgcctgaaatggatccataaggcactggaacaacgcaagcaatatgagggtgtaatg
agagaatacatgcagaagcatccggaactgaacatcacagaagagggcatcactcgctcc
actctcactaaggctgagcgccagctgaaggacaagtttgatggtcggccaaccaagcct
ccaccgaacagttactcgatgtactgtgcagaactgatggccaatatgaaggacgttccc
agcacagagcgcatggtcctctgcagccaaaggtggaagctgctctcccagaaggagaag
gacgcctaccacaagaagtgcgagcagagaaagaaagactatgaagtggagttgatgcgt
ttccttgagaatctcccagaagaggagcagcagagggttctggcggaagaaaagatggtg
ggtatgaaaagaaaaagaactaacaccccagcatcaaagatggccaccgaagatgctgca
aaggtaaagagcaggtctggccaggcagacaagaagaaagcggcagaggagagggctaaa
ctgccagagacccccaaaactgccgaagaaatctggcagcaaagtgtgattggagactat
cttgctcgatttaagaatgatcgcgctaaagccctgaaggtcatggaggccacatggtta
aatatggagaagaaggagaaaatcatgtggataaagaaggccgccgaggaccagaaacgc
tacgagagagaactaagtgatatgcgctctactccagccccaacgacagcaggaaaaaag
gtcaagtttttgggagaacccaagaaagcgcccatgaatggctaccagaagttttcccag
gagctcctgtccaacggagaactcaatcacctcccccttaaggaacgtatggcagaaatt
ggaagccggtggcacaggatttctcccactcagaaggattattacaagaagctggcagag
gaccaacagaggctctatcgtactcagtttgacacctggatgaaggggttatcgacacaa
gaccgtgcagcatacaaggaacagaatacaaataaacgcaaaagtacaacaaaaatacag
gctcctagcagcaaatccaaattagtaattcagagcaaatcggatgatgacgaagatgat
gaggatgatgaggatgaagaagacgatgatgacgacgatgatgaagataaggaggactca
tctgaagacggagattcttcagattctagcagtgatgaggacagcgaggaaggcgaagag
aatgaagatgaagaagatgaggaggaagatgatgaggacaacgaagaggacgatgatgac
aatgaatccggatccagctcttcttcatcctcttctgccgactcttctgactcggactca
aactga
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