Xenopus laevis (African clawed frog): 397978
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Entry
397978 CDS
T01010
Symbol
lig1.L, lig1, lig1.S, ligI
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03030
DNA replication
xla03410
Base excision repair
xla03420
Nucleotide excision repair
xla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
397978 (lig1.L)
03410 Base excision repair
397978 (lig1.L)
03420 Nucleotide excision repair
397978 (lig1.L)
03430 Mismatch repair
397978 (lig1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xla03032
]
397978 (lig1.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
397978 (lig1.L)
Enzymes [BR:
xla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
397978 (lig1.L)
6.5.1.6 DNA ligase (ATP or NAD+)
397978 (lig1.L)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
397978 (lig1.L)
DNA replication proteins [BR:
xla03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
397978 (lig1.L)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
397978 (lig1.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
397978 (lig1.L)
NER (nucleotide excision repair)
Other NER factors
397978 (lig1.L)
MMR (mismatch excision repair)
Other MMR factors
397978 (lig1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
DDR
Motif
Other DBs
NCBI-GeneID:
397978
NCBI-ProteinID:
NP_001081653
Xenbase:
XB-GENE-1009783
UniProt:
P51892
LinkDB
All DBs
Position
7L:108468678..108506501
Genome browser
AA seq
1070 aa
AA seq
DB search
MQRTIKSFFQPKLGAEVKTKEEKVKNDVQKEKEEPEKSVPERPLKERNGRALCGDTESPV
KRVSKKSARVLESDSEEEEENSKVQATPEKMNNESDPKNDVKETPPSARKETPPSARKET
PPSARKETPQSARKETPPSARKDAKSEGASEMNTSQDFVSPCSSKSIDSPLCSDSPGISP
SGIPKRKTARKQLPKRKLEISPSESNPPKDDFDVKGAVKRQKKEAEGDIQQEEPMETSHN
ISMEEECPIKKETNPDVVQETISNADDPNIELVDQKDVVSGEKQSEPKCQEQPQPKLTSP
TVEPKASKGKARKKNSPLPKKVKFSDKVSFKDNDSEEKSNEEKSDEEPQKKADSAKPVKQ
ISSFFAPRKPAIKTEKREENLNEKNVTETSLEESPKPKKNVGSFFGASKQEATEEQTEYN
PSKSKYHPIDDACWCNGQKVPYLAVARTFERIEEESARLKNVETLSNFLRSVIALTPEDL
LPCIYLCLNRLGPAYEGLELGIGETILMKAVAQATGRQLEKIKAEAQEKGDLGLVAESSR
SNQRTMFTPPKLMASGVFGKLKDIARMTGNASMNKKIDIIKGLFVACRHSEARYIARSLG
GKLRIGLAEQSVLSSIAQAVCLTPPGRDAPPTVMDAGKGMSADARKSWIEEKAMILKQTF
CELPNYDAIIPILLEHGIDDLPKHCRLTPGIPLKPMLAHPTKGIGEVLKRFDEAAFTCEY
KYDGERAQIHILENGEVHVYSRNQENNTTKYPDIISRIPKIKKESVKSCILDTEAVAGDA
EKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDMLYLNGESLVKEPFAKRRQLLRDSFL
ETEGQFMFATYMDKSNTDEISEFLDQSIKDSCEGLMVKTLEQDATYEIAKRSHNWLKLKK
DYLEGVGDTLDLVVIGAYLGKGKRTGIYGGFLLASYDEESEEYQTICKIGTGFTDDDLEK
HYNFLKDHVIENPRSYYRWDSATEPDHWFDPVQVWEVKCADLSISPVHKAALGLVEDQKG
ISLRFPRFLRIRDDKKPEESTNSFQVADLYRKQQQIQNTSSTEKAEEDFY
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaacaataaagtccttttttcagcccaagctaggggctgaagtaaagactaaa
gaagagaaagtgaagaatgatgttcaaaaggaaaaagaagagccagagaaaagtgttcct
gaacgtcctttaaaagagagaaatggcagagctttatgtggagataccgagtcaccagtc
aaacgagtttcaaagaagtctgcacgtgtgttggaaagtgatagtgaagaggaagaggag
aattcaaaggtacaagcgactcctgaaaaaatgaacaatgaaagcgatccaaagaatgat
gttaaagaaactcctccgagtgcacgtaaagaaactcctccgagtgcacgtaaagaaact
cctccgagtgcacgtaaagaaactcctcagagtgcacgtaaagaaactcctccgagtgca
cgtaaggacgcaaaatctgaaggagcttcagagatgaacacttcccaagattttgtctct
ccttgcagcagcaaatctattgacagccctttatgttcagattctcctggcatatctcct
tccggtatccccaaacgaaagacagcccgtaaacagctaccaaagcgtaaactggaaata
tctcccagtgaatcaaatccaccaaaagatgattttgatgtcaaaggagcagtgaagcga
caaaagaaagaggcagagggagatattcaacaagaagaacccatggagacaagtcacaat
atctccatggaagaggaatgccccataaagaaagagacaaatcccgacgttgttcaagaa
accatatccaacgcggatgatccaaacatagaacttgtagaccaaaaggatgttgtttca
ggagaaaagcaatctgagcctaaatgtcaagagcaaccacagcccaaacttaccagtcct
actgtggagcctaaagcttcaaaagggaaggcaagaaagaaaaacagtcctctgccaaag
aaagtgaaatttagcgataaagtttcttttaaagacaatgacagtgaggaaaaaagtaat
gaggaaaaaagcgacgaggagcctcagaagaaagcagattctgctaaacctgtgaaacaa
ataagcagtttctttgccccaaggaaacctgcaataaagactgaaaagagagaggaaaat
ctgaatgaaaagaatgtcactgagacctctttagaagaatcccctaagcctaaaaaaaac
gttggcagtttctttggagcatccaagcaagaagcaacagaagaacagacagagtataac
ccatccaagagtaaatatcaccccatagatgatgcttgctggtgtaatggacagaaggta
ccttatcttgctgttgcacgaacttttgaaaggatagaagaggaatctgcccgactgaag
aacgtagagactctgagtaattttctgcgctccgtcattgctcttactcctgaggatctc
ttgccttgcatctatctttgtctgaaccgcctgggaccggcatatgaaggactggagcta
ggcataggagaaactattctaatgaaagcagttgcccaggctacaggacgccagcttgag
aagataaaggctgaggcacaagagaaaggagaccttggcctggttgctgagagcagtcgt
agcaaccaacgcacaatgtttacacccccaaagctcatggcatcaggtgttttcggcaag
ctgaaagatatagccaggatgactggcaatgcttctatgaataagaaaattgacattatt
aaaggactgtttgtagcctgcaggcattctgaggcacgttatattgccagatctcttgga
ggaaaacttagaattggtcttgcagaacagtcagtgttatcatccattgctcaggcagtg
tgccttactcctcctgggcgagatgcccctcctactgtgatggatgccggaaagggaatg
agtgcagatgccaggaaatcctggattgaggagaaagcaatgatcttgaaacaaactttt
tgtgagttgccaaactatgatgccataattcctattcttttggaacatggtattgatgac
ctcccaaaacactgccgacttactccaggtatccctctgaaaccaatgttggcgcatcct
accaagggtattggggaagtgttgaagcgatttgatgaagctgcctttacttgtgaatac
aaatatgacggggagcgtgcacagatacatattctggaaaatggggaagtacatgtatac
agcagaaaccaagaaaacaacaccacaaaataccctgacatcatcagcagaattcctaag
attaaaaaagaaagcgtcaaatcctgtatcctcgatacggaagctgtagccggggatgca
gaaaagaaacaaattcagccatttcaagtactgactactagaaagagaaaggatgtggat
gcatcagagattaaagtgcaagtttgtgtgtatgcctttgacatgctttaccttaatgga
gagtccctagtgaaggagccatttgctaagcgacgacagctcttgagagactcgttcctg
gagactgaagggcagttcatgtttgctacatatatggataagtcaaatacagatgaaatt
tctgagtttcttgatcagtctattaaagattcatgtgaaggacttatggtgaagacactg
gagcaagacgctacatatgaaattgcaaagagatctcacaattggttaaaattaaagaag
gattacttggaaggtgtgggtgatactctggatcttgttgttattggagcttaccttggg
aaagggaaaagaactggtatctatggaggcttcttacttgcgtcatacgacgaagaaagt
gaggaatatcagaccatctgcaagattggaacaggttttacagatgacgacttagaaaag
cattacaacttcctgaaggatcatgtgattgaaaatccacggagctactaccgctgggac
agtgccacagagccagatcactggtttgatcctgtacaagtctgggaagttaagtgtgct
gatctatccatttctccagtacataaggcagctcttggattggtggaggaccagaaagga
atttctctgcgatttcctcgttttcttcgtatcagagacgataagaaaccagaggaatcc
acaaacagttttcaggttgcagatctttatagaaagcagcagcaaatccaaaacacaagt
tcaacagagaaggcagaggaggatttttactag
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integrated database retrieval system