Xenopus laevis (African clawed frog): 398275
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Entry
398275 CDS
T01010
Symbol
lig3.L, lig3
Name
(RefSeq) ligase III, DNA, ATP-dependent L homeolog
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
398275 (lig3.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xla03400
]
398275 (lig3.L)
Enzymes [BR:
xla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
398275 (lig3.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
398275 (lig3.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
398275
NCBI-ProteinID:
NP_001082183
Xenbase:
XB-GENE-5788023
UniProt:
Q8UVU2
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All DBs
Position
9_10L:complement(28168380..28207679)
Genome browser
AA seq
988 aa
AA seq
DB search
MKAVLKLLSYQTIRTFGQLFTKVPLQVTVLARWSPSPLRSALRFQFFLGVTNYSNMAEQR
YCVEYAKRGTAGCKKCKEKIGKGLVRIGKIVPNPFSESAGDMKEWYHIKCMFEKLERARA
TTKKIDDLTDLEGWQELQDCDKELINQHVTELATKTAATPRKKTPSKGNQSMAAQGTTPT
KAPATSPSPLKFSGYSAKPSQSPSPPSSGTGSSLSTAKCDPKHKDCLLREFRKLCAMVAE
QPSYNSKTQIIRDFLTKGTSGDGFHGDTYLTVKLLLPGVIKSVYNLNDKQIVKHFSRIFN
CNQEEMVRDLEQGDVSETVRIFFEESKSFPPASKSLLTIHEVDDLLTRLSKMTKEEDQQN
VLEDIARRCTSNDLKCIIRLVKHDLKMNSGAKHVLDALDPNAYDAFKASRNLGDVVERVL
RNEQQAPGMKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKYDGERVQVHK
NGDHFSYFSRSLKPVLPHKVAHFKDFIPKAFPGGNSMILDAEVLLIDTNTGKPLPFGTLG
VHKKAAFKDASVCLFVFDCIYFNGVSLMDRPLNERRKFMRENMVEIPNHIMFSEMKHVTK
AADLADMITRVIREGLEGLVLKDIKSNYEPGKRHWLKVKKDYLNEGAMADTADLAVLGAY
YGKGANGGIMSIFLMGCYDPEGQLWCTVTKCSSGYDDATLQRLQKELNMVKISKDPSKIP
SWLKINKNYFPDFIIQDPKKAPIWEITGAEYSKAEAHTAGGLSIRFPRCTRFRDDKDWKT
ATTLQQLKELYRLSKEKSDFNITATSSQDEDGSSECSSRENEGNSTQTSSGSLVKTIKNV
PSKSPAKGKTSESSKLPPQKKKEEPMKAEKRKSHTPTTVQSKKAKISETGHSNGHRIAQS
TAANKTLLDIFTGVKLHIPSTLDDFAKLRRYFIAFDGDLVPEYDLPTATHVMGDAPDSDT
DAKHVTPHWIWACIRRRRLVSCVDENCV
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcagttctgaaactattgtcatatcagacaataaggacctttggacagttattt
acaaaagttcctttacaagttactgttcttgcccgttggagcccgtcgcctctccgcagt
gctttgcgctttcaattctttttaggagtcacaaattactcaaacatggcagaacagcga
tactgtgtggagtacgcaaaacgtgggactgctggctgtaagaaatgcaaggagaagatt
ggaaaaggtttggtacgcataggcaaaatagttccaaaccctttcagtgagtctgctggc
gacatgaaggagtggtatcacattaagtgcatgtttgagaaactggagagagcacgggca
actacaaagaaaattgatgatctgactgatctggaaggttggcaggaacttcaagactgt
gataaagagctaatcaaccagcatgtcactgaacttgctacaaaaacagcagctacacct
cgaaaaaagaccccatccaagggaaaccaatctatggcggcacaaggaacaactcccact
aaggcaccagcaaccagtccttctcctctaaaattttcgggatactcagcaaaacccagt
caatctccaagcccaccaagctcaggcactggctccagtctttccactgcaaagtgtgac
cctaaacataaggactgccttctgcgtgagttccgcaagctttgtgcaatggttgcggaa
cagccaagctacaattccaaaacacagatcattcgtgatttcctaactaagggaacaagt
ggagatggatttcatggtgacacatatctgacagtaaagctgctattaccaggtgttatt
aagtcagtgtacaacctcaatgataagcagattgttaaacatttcagtcgtatttttaat
tgtaaccaagaggagatggtacgggacctagagcagggagatgtctctgaaactgtgcgc
atcttctttgaggaaagtaaaagctttccacctgcgtctaagagtctactgacaatccat
gaggttgatgatttgcttactagactttcaaaaatgactaaagaagaagatcaacagaat
gtcctggaggacattgctcgcaggtgtaccagtaatgatcttaaatgcataattcgcctg
gttaagcatgacttgaaaatgaactctggagccaaacacgtgctggatgctctagatcct
aatgcatatgatgcatttaaagcttcacgcaatctaggggatgtagtagagcgtgtttta
cgcaatgaacagcaggctccaggaatgaaacgaactcttagtgtccaggcttcattaatg
actccagttcagcctatgcttgctgaagcttgcaaatctatagagtatgccatgaagaag
tgtcccaatggtatgtatgctgaaataaaatatgatggtgaaagagtccaagtacataag
aatggagatcacttcagctacttcagtcgcagtctcaagccagtgcttcctcataaggtt
gctcattttaaggattttatacccaaagcatttccaggaggaaacagtatgattctggac
gcagaagttcttcttatcgataccaatacgggcaagccactaccatttggcactttaggt
gttcataagaaagctgctttcaaagatgccagtgtgtgcttgtttgtttttgattgcatt
tatttcaacggagtgagcttaatggatcggccacttaacgagcgacgaaagtttatgcgt
gaaaacatggttgaaatcccaaatcacattatgttctctgagatgaaacatgtcacaaaa
gctgctgatctggctgacatgatcacccgtgttatccgagagggattggagggtctggta
ttaaaagatataaagagtaattatgagccaggaaaacgccattggctcaaagtcaagaag
gattacttaaatgaaggtgcaatggcagacacagctgacctggcagttttgggcgcttat
tatggaaagggagcaaatggtggtataatgtccatctttctcatgggttgctatgatcct
gaaggccagctttggtgcactgtgacaaaatgctcaagtggttatgatgatgctaccttg
caacgccttcagaaggagctgaacatggttaaaatcagcaaggatccatccaagattcct
tcatggcttaaaatcaataagaactatttcccagatttcattatacaggatccgaagaaa
gctcccatttgggaaattactggtgcagagtactcaaaggcagaggctcatacagctggt
gggttatccattcgcttcccacgctgcacacgttttcgtgatgacaaggactggaaaacc
gccacaacactccaacaactaaaggaactttatcgtctctcaaaagagaaatcggacttt
aatatcactgccacatcctctcaagatgaggatggttcatctgaatgcagtagtcgagag
aatgaaggaaactctactcaaacttcttcaggcagcttggttaagacaataaaaaatgtc
ccttcaaaatctcctgccaagggcaaaaccagtgaaagtagtaaactacctcctcagaag
aaaaaagaagagccgatgaaagcagagaagcgcaaatcccacactcctacaactgtacag
agtaaaaaggctaagatttcagaaacaggtcatagtaacggacaccgcatagcccaatca
actgcagctaataaaactcttctggacatattcactggtgtaaagctgcatattccttcc
acacttgatgactttgccaaactgcgccgttattttatcgcctttgatggggacctggta
ccagaatatgatcttcctacagccacacatgtgatgggtgatgcacctgatagtgacaca
gatgccaaacatgtaacaccacactggatatgggcgtgtataagacgcaggcgattagtt
agctgtgttgatgagaattgtgtgtaa
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