Xenopus laevis (African clawed frog): 398525
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Entry
398525 CDS
T01010
Symbol
ppfibp1.S, ppfibp1
Name
(RefSeq) PTPRF interacting protein, binding protein 1 (liprin beta 1) S homeolog
KO
K27096
liprin-beta
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
398525 (ppfibp1.S)
Membrane trafficking [BR:
xla04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
398525 (ppfibp1.S)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
DUF16
SAM_PNT
FlaF
T3SS_ATPase_C
CALCOCO1
Motif
Other DBs
NCBI-GeneID:
398525
NCBI-ProteinID:
NP_001082516
Xenbase:
XB-GENE-1014149
UniProt:
Q6DD79
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Position
3S:complement(1384477..1425227)
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AA seq
970 aa
AA seq
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MMSDASEMLAAALEQMDGIIAGSKALEYTNGIFDCQSPTSPFLGSLRVLQLIEDLRGMLE
MMETDERDGLRGQLPDSTADVLVEWLQSHMVNGHISGSTDICQERLARLENDKESFVLQV
SVLTDQVEAQGEKIRDLEFCLEEHREKLNDTEEMLQQELLSRTSLESQKLDLMAEISNLK
LKLVSVEKDRKEFEERYKDTEGLVQEMNELRLRVSEMENERSQYEKKMKSNKDELSLLKE
QLEHKEVDIKTLKESVERPPEVTDAVAGSERDVEVQKMKKAMESLMAANEEKEQKIEELR
QSLSRYKKVQDMVVLAQGKKGKEVESDDSVISGSNSLVFDGNTLSDADKSPSPLPISATP
SPEELPVDPQPKVEMHTSILQVSIPSFSSIRPFQRQNEAPAPAPKEEASPPDVGDGETPS
LPADATTPEVPGSPVRKSSSLGSLKKEPAELRTVSPEPGKFETLPPRPPGQGAAPDDESF
GSRKARSSFGRGFFKMKNTKKTSSTPNLDTEKGSTDHLDLAVSSPNSMEGGSPHSSPSSP
NYKKKSRGIRKLFGKLKRSQSTTLNQEDELPEEEFKRGGTRSTAGPRLGWSRDLGQVNSE
LDTPFAKWTKDQVCSWLRDQGLGGYVSSCKQWIVSGQTLLHASQHDLEKELGIKQPLHRK
KLQLALQSLGSEDESNYGRLDYRWVTRWLDDIGLPQYKTQFDDSKIDGRMLHYLAVEDLL
SLKVVSVLHHLSIKRAIQVLRINSFEPNCLRRRPSDESNISPSEVAQWTNHRVMEWLRSV
DLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGQQAQ
IQKQEALASPEYVLLTATAKVKPKKVAFSNFGTLRKKKQEEVEEYLCPMDLDQNSGDGII
TPLRPSLDLRMLNDDDLDRLEQMEDSEGTVRQIGAFSEGINNLTHMLKEDDMFLDYSALS
PSVTDDDSNV
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcggacgcaagtgaaatgttggccgcggccttggagcaaatggacggaattatt
gccggctccaaggccctggaatacaccaatgggatatttgactgccagtctcccacctcc
ccgtttctgggaagtctgcgggtgctgcagctcatcgaggatcttcgggggatgttggaa
atgatggagacggatgagcgggacggactgcgcggccaactgccagattctactgccgac
gtcctggtggagtggctgcagagtcacatggtaaatggacacatatccggcagcaccgac
atttgccaggagaggttggcccggctggagaacgataaggagtcattcgtcctgcaggtg
agtgtcctaaccgaccaggtggaagctcagggggagaagatccgggatctggagttctgt
ctggaggagcacagagagaagctgaacgacaccgaggaaatgctccagcaggaacttttg
agtcggacctctctggaaagtcagaaactggacctgatggcggaaatctctaacctgaag
ctgaagttggtctccgtggagaaagaccgcaaggagttcgaggagaggtacaaggacacg
gagggactggtgcaggagatgaatgagctgcgactccgagtctctgagatggagaatgag
aggtctcagtatgagaagaagatgaaatctaacaaggatgagctgtcgctgctgaaggag
caactggaacacaaggaggtcgatataaagacactgaaggagagtgtagagcgccccccg
gaggtgactgacgcagtcgcagggagtgagagagatgtcgaggtgcagaagatgaagaag
gcaatggaatcattaatggctgccaatgaagagaaggagcagaagatcgaggagctcaga
cagtctctcagcaggtacaagaaggtgcaggacatggtggttctggcgcagggtaaaaaa
ggcaaagaagtggaaagtgacgattctgtgatatccggctccaattctctcgtatttgat
ggcaacacgctcagcgacgctgacaaaagcccctcccctctccctatatccgccacccca
agcccagaggaactccctgtggatccgcagcccaaggtggagatgcacacgagtatcctg
caagtctccatcccctccttctcctcaatcagacccttccagcggcagaatgaagcgcca
gctcctgctccaaaagaggaagcttctccccccgacgttggcgatggtgagacccccagc
ctccctgcagatgccacaaccccagaggtgccaggatctcccgtcaggaaatccagcagc
ctggggagcctgaagaaggaacctgctgagctgagaacggtttccccagaaccgggcaag
ttcgaaaccctccctccgcgtccccccggccagggggcagcccccgatgatgagagtttt
ggaagtcgtaaagccaggtcatccttcggccgaggcttctttaagatgaaaaataccaag
aagacgtcgagtacccccaatctagacacggagaagggctccacagaccatctggatctg
gcagtctcttccccgaattccatggaaggaggaagcccccacagctccccgtcttctccc
aactacaaaaagaaatcgagaggaataaggaaactgtttgggaagctgaagaggagtcag
tccacaacactgaaccaggaagatgagctgccagaggaagaatttaagaggggaggaaca
agatccacggctgggcctagacttggctggtcccgtgatctggggcaagttaacagtgag
ctggacacgccgtttgctaagtggacgaaggatcaagtgtgctcgtggcttcgggatcaa
ggattgggcggttacgtgagcagttgcaagcagtggatcgtctcaggacagactttactt
catgcctctcagcatgacctggagaaggaactggggatcaaacagccgttgcacaggaag
aagctccagttggctctgcagtcgctggggtcggaggacgagagcaattatgggagattg
gactacagatgggtgaccaggtggctggatgatattgggctcccccagtacaagacccag
tttgatgactccaagattgatgggaggatgctccactatttggctgtggaggatctgctc
tccctgaaagtggtcagtgtcctccaccatctcagtataaagagagccattcaggttctg
cggatcaacagcttcgagcccaactgtctgcgccggcgcccgtctgatgagagtaacatc
agcccctcggaggtggcgcaatggaccaatcacagggtcatggagtggttacgttcagtg
gatctggcagaatacgccccgaatttacgggggagtggcgtgcacggggggctgatggtt
ctcgagcctcgttttaatgtggagacaatggcccagttactgaatatcccacccaacaag
accctcctgcgccggcacttagccacccacttcaacctcctcattggccaacaggcccag
atacagaagcaggaagccctggcgtccccagaatatgtgctcctgactgccaccgctaaa
gtaaagccaaagaaagtggcgttcagtaactttggaacgttgcggaagaagaagcaggag
gaggtggaggaatacttgtgtccgatggatttggatcagaattctggcgatgggataata
acgcccctgaggcccagtctggacctgcgcatgttaaatgatgacgatttggaccgactg
gagcagatggaggattcagaggggacagtgaggcaaatcggggcgttctctgaaggaata
aacaatctgacacacatgctgaaggaggacgacatgtttctggattactccgccctctcg
cccagcgtcacagacgacgactccaacgtgtga
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