Xenopus laevis (African clawed frog): 444289
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Entry
444289 CDS
T01010
Symbol
upf1.S, hupf1, norf1, pnorf1, rent1, upf1
Name
(RefSeq) UPF1 regulator of nonsense transcripts homolog S homeolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
444289 (upf1.S)
03015 mRNA surveillance pathway
444289 (upf1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
444289 (upf1.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
444289 (upf1.S)
5.6.2.5 RNA 5'-3' helicase
444289 (upf1.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
444289 (upf1.S)
mRNA cycle factors
Common to processing body (P body) and stress granule
444289 (upf1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
444289
NCBI-ProteinID:
NP_001085862
Xenbase:
XB-GENE-6255683
UniProt:
Q6GNR2
LinkDB
All DBs
Position
1S:complement(89231203..89265292)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQGQSQSQLDGQVNGPD
GMLQNGTVDDGVGKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMIGSGPSHVTAMNI
PIPFNLVMPPMPPPGYFGQANGPAPGRGMPKGKSTRGGRPKQRGIGLQGMSQGNMPNSQA
SQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDST
YQGERAYQHGGVTGLSQY
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcaaaccctcaccttcttggatacagaggag
gccgagttgctcggggccgacactcagggctcagagttcgagtttacagacttcacgttg
ccgagccagacacaaggacaaagccagagccaactggacggtcaggtaaacggtcctgat
ggcatgcttcagaatggcacagtggatgatggtgttggcaaaactagccagttgttgggt
gaactgaactttgaggaagacgaggaagacacctattataccaaggatcttccagtgcat
gcttgcagctattgtggtatccatgatccagcctgtgttgtgtactgcaacaccagtaag
aagtggttttgcaatggtcgaggaaacacttctggcagccatatcgtaaaccatttggtc
cgggctaaatgtaaggaggtaacgctccacaaagatggacctttgggagaaaccgttctg
gagtgttacaactgtgggtgtcgtaatgtttttcttcttggattcattcctgctaaagct
gactctgtggttgtactactttgtagacaaccttgtgccagtcaaagtagcctgaaggat
atcaattgggatagctcccagtggcaaccgctcattcaagatcggtgcttcctttcttgg
ctggtaaagataccttctgagcaggagcaactgagagcccgtcaaattacagcccaacaa
atcaacaaactggaggaactgtggaaggaaaacccatcagctactctagaagacttagaa
aagcctggtgtcgatgaagaaccacagcatgtcttgctgagatatgaagatgcctatcag
taccaaaatatctttgggccacttgtcaaacttgaagctgattatgacaagaagcttaag
gaatctcagacccaagataacattacagtgaggtgggacctagggctcaacaagaaaaga
attgcatacttcactttgcccaagactgattcagatatgcgcctaatgcaaggtgatgag
atttgtttgagatacaaaggagatttggcacctctttggaagggcattggtcacgttatt
aaagttcctgataattatggtgatgaaattgccattgagttgagaagtagtgttggtgca
ccagttgaagtcactcacaatttccaagttgactttgtttggaaatcaacctcatttgac
agaatgcagagtgctttgaagacctttgcagtggatgaaacctccgtttcaggttacatc
taccataagcttttgggacatgaagttgaagatgtgattataaaatgccagcttccaaag
agatttacagcacaagggcttcctgatcttaaccactcacaggtttatgcggttaagacc
gtattgcagcgcccacttagtcttattcagggcccacctggaactggtaaaactgtaaca
tcagccaccattgtttatcatctggcaaggcaaggaaatggacctgtcctggtttgtgca
ccaagcaacattgctgtagaccaactcactgaaaaaatccaccaaacaggactcaaagtt
gttcgtctctgtgcgaagagccgtgaagctattgactcacctgtttctttcttggctttg
cacaaccaaattcgcaatatggaaagtatgcctgagctccagaagttgcaacagttgaaa
gacgagactggagagttgtcctctgctgatgaaaagcgatatcgtgccttaaaaagaact
gctgagagagagctacttatgaatgcagatgtgatttgctgtacttgtgtgggtgcaggt
gaccctagacttgcaaagatgcaatttcgctctatcttgattgatgaaagcactcaagcc
actgaaccagagtgtatggtaccagttgttttgggagccaaacagcttattcttgtgggt
gatcactgccagcttggcccagttgtaatgtgcaagaaagcggcaaaagcaggactgtct
cagtctctgtttgagagacttgtagttctgggcatccgaccaattcgcttgcaggtgcag
taccggatgcatcctgctctaagtgcatttccatcaaacatattctatgaaggatctctt
cagaatggtgttactgcagcggaccgtgttaaaaaaggatttgactttcagtggcctcag
ccagataaaccaatgttcttttatgtgacccaaggacaggaagaaattgccagctctggt
acctcttacttaaacagaaccgaagctgctaatgtggagaagatcaccacgaagcttctt
aaggcaggagctaaaccagatcaaattgggataatcacaccatatgaaggccagcgctct
tacctggttcaatatatgcagttcagtggttccttgcatacaaaactctaccaggaggtt
gaaattgcaagtgtggatgcttttcaggggcgtgagaaagactttattattctttcttgt
gtacgagccaatgagcatcaggggattggattcttaaatgatccccgtcgtcttaatgtg
gctttaaccagagcaaggtatggggtaattattgttggaaaccccaaagctctttcaaag
cagccgttgtggaatcatctcctgaattattacaaggaacagaaagttcttgtagagggt
cctctaaataatctaagggagagtctcatgcagttcagcaaacctcgcaaacttgtcaac
accattaatccaggtgcccgtttcatgacaactgcaatgtatgatgctcgtgaagccatc
atccctgggtctgtttatgatcgaagcagtcaaggacgtccctcaaacatgtattttcag
acccatgatcagattggcatgattggctctggacctagtcatgttactgctatgaacatt
ccgataccattcaatctagttatgcctccaatgccacctcctggctattttggacaggca
aatggaccagctccaggacgtggtatgcctaaaggaaagtcaacacgtggtggacgtccg
aaacagcgaggcattgggcttcagggcatgagtcaaggaaatatgccaaacagtcaggcc
agtcaagatgttgtgtcccaaccattctctcaaggccctctaacccagggttatatttcc
atgagccagccatcccagatgagccagccaggactctcccagccagagttatcacaggat
agctatcttggtgatgaatttaaatctcagatcgatgttgcattatcacaagactctaca
taccagggagaacgtgcgtatcaacatggtggtgtgactgggctatcccagtactag
DBGET
integrated database retrieval system
