Xiphophorus maculatus (southern platyfish): 102221516
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Entry
102221516 CDS
T02923
Name
(RefSeq) S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xma03016
]
102221516
Enzymes [BR:
xma01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
102221516
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
102221516
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Flavodoxin_1
Wyosine_form
Radical_SAM
DUF3280
Motif
Other DBs
NCBI-GeneID:
102221516
NCBI-ProteinID:
XP_023207567
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Position
18:3082478..3124070
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AA seq
745 aa
AA seq
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MLALLTVISFLAGSLSTSDTKVPQDVRSPTENYLLWTWNNRLYVYSAAALLLGFCFLLQV
TRRKINHTKDSGLKVQKAAKNKISSDKDGDVHVSGVKIFYGSQTGTAKGFASELSQEVQT
LGIPAEVIDMKDYDPDDRLADECVSKSVCVFLVATYSDGRPTENAEWFCKWLEEASTDFR
YGNSFLKGLRYAVFGLGDSVYVGHYNTVGKNVDKWLWMLSARRVLSRGEGDGNVVKSRHG
SVQADFRAWEVRFLSRLKALARGEKKSCSGNCKNGASCKNRKKHGAQEEEENGSEVELIE
SSSEEEESGLSGEKMSRSVVDVEDLGNIMNNVKRAKGVKEDQGDGQMVKLTKQNGVMKTA
DEEERREMITPALREALTKQGYKLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRC
METTPSLACANKCVFCWRHHTNPVGTEWRWKMDPAEKILQDSLEKHQNMIRQFRGVPGVK
PERYEEGLAAKHCALSLVGEPIMYPEINTFLRLLHSHHISSFLVTNAQFPEEIRNLVPVT
QLYVSVDASTKDSLKKIDRPLFKDFWPRFLDCLRALGEKKQRTVYRLTLVKAWNVEELQA
YAELIALGQPDFIEVKGVTYCGESSASSLTMANVPWHQEVVAFVQQLADMLPRYDIACEH
EHSNCLLIAHDKFKVNGEWWTWIDYDRFQDLVQAHEDSGGQQSFSALDYTAKTPSWALFG
SNEQGFDPADTRFQRRNKTKDISGC
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgttagctttacttacagttatttcctttcttgcgggctctttgtctacctccgacact
aaagtcccacaggatgtccgcagtcccactgaaaactatctgctgtggacgtggaacaac
agactctacgtttattctgctgctgctctgctgctgggtttctgcttcttactgcaggtt
acacgaaggaagataaatcatacaaaagattctggtttgaaggttcaaaaagctgcaaaa
aacaaaatcagctcagataaagatggtgatgttcatgtttcaggggttaaaatcttctac
ggctcacaaactggaacagcaaagggttttgcctcggagctctcgcaggaggtgcagact
ttgggtatcccagcggaggtgatagacatgaaggactacgacccagacgatcgacttgca
gacgagtgcgtcagtaagtccgtctgcgtgtttctcgtggccacgtactcggacggacgg
cccactgagaacgccgagtggttctgcaagtggctggaagaagcttccaccgacttccgc
tacggcaactccttcctcaaggggctccgctacgccgtgttcggcctcggcgactccgtc
tacgtcggccactacaacacggtgggtaaaaacgtcgacaagtggctgtggatgctgagc
gccaggcgagtgttgagcagaggagagggcgacggcaacgtggtgaagagccgacacggc
agcgttcaggcggacttccgggcctgggaggtccggttcctgagccgcctcaaggctctg
gccagaggggagaagaagagctgcagcgggaactgtaagaacggcgcttcctgtaagaac
aggaaaaaacacggagcgcaggaggaggaggagaatggatccgaggtggagctgattgaa
tccagcagtgaggaggaagagtccggcttgtcgggtgagaaaatgtcccgctccgtggtc
gacgtggaggatctgggcaacatcatgaataacgtcaagagagcaaagggtgtgaaagag
gatcaaggagacggccaaatggtgaaactgaccaaacagaacggagtgatgaagactgca
gatgaagaggagagaagggagatgatcaccccggcgctgagggaagcactgaccaagcaa
ggttataagttaattggaagtcactccggagtgaagctgtgccgatggaccaagtctatg
ttacgagggagaggaggttgctacaaacacacgttttacggcatcgagtcgcatcgctgc
atggagacgacgcccagcctggcctgcgcaaacaaatgcgtcttctgctggagacaccac
accaacccggttggcaccgagtggcgctggaaaatggacccggcagagaaaatcctgcag
gactccctggagaagcaccagaacatgatccgacagttcagaggcgtccctggagtgaag
ccggagcgatacgaggagggtttggccgccaagcactgcgccctgtccttggtgggcgag
ccaatcatgtacccagaaatcaacacctttcttcgcctcctccactctcatcacatctcc
agtttcctggtcacaaatgctcagttcccagaggaaatcaggaacctggtgccggtgact
cagctgtacgtcagtgtggatgccagcaccaaggacagcctgaagaagattgatcggcct
ctttttaaggacttctggcctcgtttcctcgactgcctcagggctttgggagagaaaaag
cagaggacggtttaccgactgacgctggtgaaagcctggaacgtggaggagctgcaggcc
tacgccgagctcatcgctctgggtcagcccgacttcatcgaggtcaagggcgtgacgtac
tgcggggaaagctcggccagcagtctgaccatggccaacgttccctggcaccaggaagtg
gtcgccttcgtccagcagctggctgacatgctacctcgctacgacatcgcctgtgagcac
gagcactccaactgtttgctcattgcacatgataagttcaaggtgaacggcgagtggtgg
acttggatcgactacgaccgtttccaggatctggtccaggctcacgaagacagcggcggg
cagcagagcttctcggccttggactacaccgccaagacccccagctgggctttgtttggg
tcaaacgaacaagggttcgacccggccgacactcgcttccagcggcgcaacaaaaccaaa
gatatctctggatgctga
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