Xiphophorus maculatus (southern platyfish): 102223715
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Entry
102223715 CDS
T02923
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102223715 (rpap1)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
102223715 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
102223715
NCBI-ProteinID:
XP_005801176
Ensembl:
ENSXMAG00000013276
UniProt:
M4AFT6
LinkDB
All DBs
Position
19:4826206..4849623
Genome browser
AA seq
1390 aa
AA seq
DB search
MLRRPKPTDSEADLLREQERFLTSGAPSAASMVRRPDKRRGEAGDAEGTDSSENERNQKD
VVTIEDLPDQLPSLTPAPPKKSRFKASRVTFEDAGERLDRHDTHISAVLSRIVERDTSCA
PISLPAFTGLAFPKVLHRSEASTQVPSSSSKGRRSIFARQIAAQRLKEDKTLKPSSAEPR
DQILCSDAGSRLVSGEGLQGPDSSGETLRIHQENQTKLHAMSKSEILEEQKKLLSQLDPR
LVEFIRSRKSQSAVSPGSPSEHAAAADARSQDDPPAEHPESGESCRTAAGSVQSPAEAEM
EEENEVKSPPLTGEDLPVKPQKEWIHMDTLEPEKLEWMRDLPSPRKKGTTKAMQARFDFT
GTLIPPSEDLPTHLGLHHHGDEPERAGYSLQELFLLSRSQLIQQRSLALNTLACILTKAR
GGAYQSVLKGSVTSTLLDAGLLFLLRFALDDSIEGVMSVAVHALKALLVCAEDEECLDCT
FSWFRGLASFPLLPSSQEEEDEEDEGLEESMRETAEEKEERKSDYDVARQDVIKGLLRMK
LLPRLRYILEVVRPSPRVVQDVLHVLTRVTRHSSWSATQVLDCPRLMETVMSEFLPTSWT
SPSSLSPPSVYGCPVADAMKLLRVLATSGRHACARLLNSLGVRERLSCLLSAEPSELLME
PNEALRIATEAYRLWTVAAAYGQACQLYIDLYPALVRTLQAFNSILSTSDPLQLHRLSAL
LSLLTQVTHTAGCHQELQAGMVRAQGEECPPPPPVSWGHVTGLQPLLLGHLKGLVKGLDN
PVQRDGVLTLIPAYLVYLQAHYQQLSRQTCFKPVETLQDLELLTSEVLHPLMCHNVVQNL
MKNLRSSSVVCNLQSSPQSPEITPSLPGLACSGWRDHPGLVAPSSPFPLLTGLGLVFETI
TEIHKGLSRKFSGFLLSEPVIGYLRSCSQATPTLSHSRSWLLRHEHHFLYLLLRLAHRLV
PVEPEVAKHASLYHQVALVLLPWLLPGSEYLAHELLSTVIFSKDFISESHSGGPEAVELG
ELNLHTQHQTSPSLQTVGALLREACTQLPSIRGCYLTQLAHLEQSVITSRVVFLGRNPWI
GSHLLPELTGPTLPSDWPFIPLIGLYERTGVSDGGGLAVEELPHGSLQTVTHCLQWLLLL
EVWREEALKVVLPVAKLARLSCVFLCSSDLFLERPVQRLTWGLFRLLTRGSRLDSLDLDV
PPPGLASFQDLYSALLAQYEAVSFGDQLFCCWVLLPLQRRYSASMRLAVFGEHVGMLRSL
GVTLDQLSVPIERFTSPPEDSLPLLRLYFRALVLGSLKLSWCPVLYVVALSHINSFIFSQ
DAAVQEVEATRLTMLRKIYYLTDEVLKNHLLLFRLTQQHLQLGFDMYEQLPAVRAKRLET
VLGLQDDSRA
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgacgccccaaaccgaccgactctgaggcggacctcctgagggagcaggagcgc
ttcctgacctctggagcgccgtcggctgcctctatggtccgccgtcctgacaagaggagg
ggagaggctggagatgctgagggaacggacagcagcgagaatgaacgaaatcagaaggat
gtggtcaccatagaagatcttccagaccagctaccctctttaacaccagcccctccgaag
aagtctcgatttaaagccagtcgtgtcacttttgaggatgctggcgaaaggctggacaga
cacgacacccacattagtgctgttctctccaggattgtggagagagacaccagctgtgcc
ccaatatctctaccagcgtttacaggcctggcttttccaaaagttctgcaccgctcagaa
gccagcactcaggttccgtcttcgtcatccaaagggaggaggagcatctttgctcgtcag
attgcagctcagagactaaaagaggacaaaacactgaaaccatcttcagctgaacccaga
gatcagatcctctgttccgatgctggttctaggttggtgtccggtgaaggccttcagggt
ccggacagttctggagaaaccctgaggatccaccaggagaaccagacgaagctccacgca
atgtccaaatctgagattctagaggagcaaaagaagcttttatctcagcttgatcccaga
ctggtggagtttatcagatctcgtaaatctcagagtgccgtgtcgcctggttccccgtct
gaacacgcagcagcagcagatgcacgcagccaagatgatcctcctgctgaacacccagag
agcggagaatcctgcagaactgctgccgggtcggttcagagtccggcggaggcggagatg
gaggaggaaaacgaggtgaaatcaccacctttaactggggaggacctgccggtgaaaccc
cagaaggaatggatccacatggacaccttagaaccggagaagttggagtggatgagagat
ttgccttcacccagaaagaaaggaaccacaaaggccatgcaggctcgttttgacttcact
gggaccttaattcctccctcagaagatctgccgacccacttaggcctgcaccaccatgga
gacgagcctgagcgagccggctactccctgcaggagctcttccttctgtctcgcagtcag
ctcatccagcaaagaagtctggctctcaacactctcgcctgtatcctcactaaagcgcga
ggtggagcgtaccagtcggttctgaaaggcagcgtgacgtccacgctgctcgatgccggt
ctgctcttcctgcttcgctttgcgctggacgacagcatcgaaggagtgatgtctgtagcc
gtgcatgcactcaaagcactgcttgtgtgtgcagaagatgaagagtgcttggactgcacg
ttctcctggtttcgtggcctggcgtctttcccgctgctgccatcctcacaggaggaggag
gatgaagaggacgaagggctagaagaaagcatgagggagacagccgaggagaaagaagaa
aggaagagtgattatgatgttgccaggcaggatgttatcaagggtttgttgaggatgaag
ctcctccccaggctgcgctacattctggaggtggtccgaccatccccacgcgtggttcag
gacgtcctgcacgtcctgacgcgcgtcacacgacactcctcatggtctgccacccaggtg
ttggactgtcctcgcctgatggagacggtgatgtccgagtttcttcccacttcctggacg
tctccatcgtccctcagtcctccgtctgtttacggatgtcccgtggccgacgccatgaag
ctgttgagggttttggcgacatctgggagacatgcatgcgccagattgttaaactccctg
ggagtgcgggaacgcttgtcctgcctcctgagtgccgagcccagtgagctcctgatggag
ccaaacgaggccctccggatcgccactgaggcctacaggctgtggactgtagcagccgcc
tacggacaagcctgccaactgtacatagacctgtacccagccttggtgcggacgctgcag
gctttcaacagcatcctgtcaacctcagatcctctgcagctgcatcgtctctccgctctg
ctgtctctgctcacacaggtcacacacaccgctggctgccatcaggagctgcaggccggc
atggtcagagctcagggagaggagtgtccccctcctccgcccgtgtcctggggacacgtt
actggtttgcagccgctcctgttgggacatttgaagggcttagtcaaaggcctcgataat
ccagttcagagagacggcgtcctgactctgatacctgcttatctagtctacctacaagct
cactaccagcagctctccagacagacctgcttcaagccagtggagactcttcaggacttg
gagctcctgacgtcggaggttctccaccctctcatgtgtcacaatgttgtgcaaaacctg
atgaagaatctcaggtcctcctcggttgtgtgtaaccttcagtccagtcctcagagccca
gagatcacgcccagcctccctggtttggcatgttcaggatggagggatcatccaggactg
gttgctcccagctctcccttccctctcctgactggactgggactcgtctttgaaaccatc
acagagatccataaaggtctcagtaggaagttctcaggcttcctgctgtcagagcctgtg
attggttacctgcgcagctgcagccaggccacgcccactctgtcccacagcaggtcctgg
ctgcttcgccacgaacatcacttcctctacctgctgctccggctggcgcacagactggtt
ccagttgagcctgaagtagccaaacatgcctcgctttaccaccaggtggcgctggtgctt
cttccctggttacttccaggcagtgaatacctggcacacgagctgctttccactgttatc
ttcagcaaggactttatatcggagtcccacagcggcggaccagaggctgtggagctcggg
gaactgaatctccacacccagcatcagacgtctccctccctccagactgtcggcgctctc
ctgagagaagcctgcacccagctgccctccatacgaggctgctacctcacccagctggcc
cacctggagcaatcagtgatcacatcccgagttgtttttctggggcgcaacccttggatc
gggtcccatctgctcccggagctcaccggacccacgctcccgtctgactggccgttcatc
ccgctgatcggcctgtacgagcggaccggggtgtctgacggcggagggctggcggtggag
gagctgcctcatggatctctgcagacggtgacccactgtctgcagtggctgctgctcctg
gaggtctggagggaagaagctctgaaggtcgtccttcctgtcgccaaactcgcccgcctt
tcctgcgtcttcctctgttccagcgatctgttcctggagagaccagttcagaggctgacc
tggggtctgttcagactgctcaccagggggtccagattggactctttggacctggatgtg
cctcctccaggtctggcctccttccaggatctgtactcggcccttctggcccagtatgaa
gccgtgtcgtttggagaccagctgttttgctgctgggttctcttgcctctgcagaggagg
tacagcgcctccatgaggctggctgtttttggagaacatgtggggatgctgagatcgctg
ggtgtcactctggaccagctgtccgtccccatcgagcggttcacctcgccgcctgaagac
tccctccctcttcttcgtctgtactttcgtgctttagtgctgggatccctgaagttgtcc
tggtgtcccgtcttatatgtggttgccttgtctcacatcaactccttcatcttctcccag
gatgccgcggtgcaggaggtcgaagcaactcgattgactatgctgaggaagatctactac
ctgactgatgaggtgttgaagaaccacttgcttcttttccgtctgacccaacagcacctc
cagctcggctttgacatgtacgaacagcttcccgccgtcagggcgaagcgtttagagacc
gttctcggtctgcaggatgacagcagagcctga
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