Xiphophorus maculatus (southern platyfish): 102223735
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Entry
102223735 CDS
T02923
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102223735 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102223735 (ddx46)
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102223735 (ddx46)
Spliceosome [BR:
xma03041
]
Complex A
U2 snRNP components
U2 related factors
102223735 (ddx46)
Complex B
102223735 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
102223735
NCBI-ProteinID:
XP_023197741
Ensembl:
ENSXMAG00000008312
LinkDB
All DBs
Position
11:7908065..7925480
Genome browser
AA seq
1069 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGTRSKSRSPDNKRSKKDDRDRSRRDRSRSRDRRRSRSRDRKR
ARRSRSRDRRRSRSRERKRSRSRSRTRRSRTGSPAKSKKSDEKAKSKEKEKESVEPVSEK
KKVKEEKEDEKVEDVSSKQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELE
EMKQGKKWSLEDDDDDDEEGPALMEVDEDEEDGEEKGEGKEKDAEEVKKEEGEAEKEAPM
EQQEEEDEVDPLDAYMEEVKQEVKKFNIGAMKGNDKKGATTVTKVVTVVKTKKQPMTHKK
KGELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHTKIQYEPYRKNFYVEVP
ELAKMTTEEVNAYRLELEGITVKGKGCPKPIRTWVQCGVSMKILNSLKKQAYEKPTPIQA
QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEEGEGPISVIMTPTRELALQ
ITKECKKFSKPLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNL
RRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIE
VQVGGRSVVCSDVEQHVLVIDEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLM
KASYPCLSLHGGIDQYDRDSIINDFKTGVCRLMVATSVAARGLDVKQLILVVNYNCPNHY
EDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDILKALELSGSAVPPELEQLWASFKDQQ
KAEGKVIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESM
FNSKKRVKDLSAPGAAAGPAGAVTASSAAPGGPAGLMPGSAGNNQKLEMAKRLALKINAQ
KNLGAEAQDVMQQATNAILRGDPIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQA
AEQAETVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEG
ERKIYLAIESASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtccagacactacaggaagcgctcagcgtcccgcggccggtcgggcacc
cggtcgaagagtcgctccccggacaacaagcgctcaaagaaagacgaccgagaccgaagc
aggagggatcggtccaggagcagagaccgcaggaggtcccggtccagagacaggaagaga
gcccggcggtcccggagcagagaccggaggaggtccagaagccgggagaggaagagatcg
cgcagtcggagtcgaactcgcaggtcccgaaccggcagcccggcaaagagcaagaagtca
gatgaaaaagccaagagcaaagaaaaggaaaaggagagcgtcgagccagtttccgagaag
aagaaggtgaaagaggagaaagaagatgagaaggtggaggacgtaagttcaaaacaagat
tttgaccaaaacaaactggaggaagaaatgaggaagaggaaggagcgtgtggagaaatgg
agagaggagcagaggaagaaggcgattgaaaacattggagagataaagaaagaactggaa
gaaatgaaacagggcaagaaatggagcctggaggacgacgacgatgatgatgaggagggt
cctgctctgatggaagtggatgaagatgaagaggatggggaagaaaaaggggagggaaaa
gagaaggatgcagaggaagtgaagaaggaggagggcgaggctgagaaggaggcgccgatg
gagcagcaggaggaggaggacgaggtggatcctctggacgcctacatggaggaggtcaaa
caggaagtgaagaagttcaacatcggagccatgaagggaaacgataagaaaggagcaacg
acggtaaccaaagtggtgacggtggtaaagaccaagaaacaaccgatgacgcacaagaag
aagggagagctgatggagaacgaccaggacgccatggagtactcgtcggaggaagaggag
gtggacctgcagacggctctgacgggttttcagaccaagcagaggaaagttctggagcca
gtcgaccacaccaagatccagtacgagccgtaccgcaagaacttctacgtggaagttcct
gagctggccaagatgaccacagaggaggtgaacgcgtacaggctggagctggaaggcatc
accgtcaaaggcaaaggttgtcccaaacccatcaggacctgggtccagtgtggcgtgtcg
atgaagatcctcaactccctgaagaagcaggcatatgagaagccgacgcctatccaggcc
caggccatccccgccatcatgtccggcagagacctgatcggcatcgccaagactggcagc
gggaagaccatcgccttcctgctgcccatgttccgccacatcatggaccagcgccccctg
gaggagggagaggggcccatctctgtaatcatgactcccaccagagagctggctctgcag
atcaccaaggagtgtaagaagttctccaaaccgctggggctgcgagtggtgtgtgtttac
ggagggacgggaatcagcgaacagattgcggagctgaagcgcggagcagagatcatcgtt
tgcactccagggaggatgattgacatgctgggcgccaacagcggccgggtcaccaacctg
cggagggttacgtacgtggtgctggacgaggcagacaggatgtttgacatgggctttgag
ccacaggtgatgcgtatcgtagacaacgtgcgtcccgaccggcagacggtcatgttctcc
gccaccttccccagagccatggaggcgctggcccgcaggatcctggccaagcccatcgag
gtgcaggtcggaggtcgcagtgtggtctgctcagatgtggagcagcacgtgctggtgatt
gatgaggagaagaagttcctgaagctgctggagatcttgggtcactaccaggagaaagga
tccgtcatcatctttgtggacaaacaggagcatgcagacggcctgctgaaggacctgatg
aaagcctcgtacccctgcctgtctttacatggaggcatcgaccagtacgaccgagacagc
atcatcaacgactttaagacgggagtgtgtcgcctgatggtggccacctcagtggcggcc
agaggcttggacgtcaagcagctcatcctggtggtcaactacaactgccccaaccactat
gaggactacgtccacagggcggggcgcaccggcagggcgggcaacaagggttacgcctac
accttcatcacagaggaccaggctcgctacgctggcgacatcctgaaggccttggagctg
tcaggctcagccgttcctccagaactggagcagctgtgggcttccttcaaggaccagcag
aaggcggagggtaaggtgattaagagcagcagtggcttctcagggaaaggctttaagttc
gatgagacggagcacgctctggccaacgagaggaagaagctgcagaaagctgcgctggga
ctgcaggactctgacgatgaggacggcgccttggatatcgaggagcaaatagaaagcatg
ttcaactctaagaagcgggtgaaggacctgtcggctcccggcgcggccgccggtcccgcc
ggcgccgtcacggcttcatcggcggcccccgggggcccggcgggcctcatgcctggatcc
gctggaaacaaccagaagctggagatggccaaaaggctggcgctcaagatcaacgctcag
aagaacctgggcgccgaggctcaggacgtgatgcagcaggccaccaacgccatcctgcgc
ggcgaccccatcatgaccccgtcggtgtcggccaagaccatcgcagagcagctggcggag
aagatcaacgccaagctgaactacacgccggtggagaagctggaggaggagcggcaggcg
gctgaacaggccgaaaccgtcaagagatacgaagaggagctggagatcaacgacttccct
cagacggcccggtggaaggtgacgtctaaagaggctttgcagaggattggtgaatactct
gaggcggccatcaccatcagaggaacgtatttccctccaggcaaagagccgaaggaggga
gaacgaaagatttatctggctattgagagtgcgagtgaactggctgtgcagaaagccaaa
acggagattacacggctaataaaggaagagctcatcagattacaaaattcctaccagccg
acaagcaaaggccgctacaaggtgttgtag
DBGET
integrated database retrieval system
