Xiphophorus maculatus (southern platyfish): 102228908
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Entry
102228908 CDS
T02923
Symbol
col19a1
Name
(RefSeq) collagen alpha-1(XIX) chain isoform X1
KO
K24340
collagen type XIX alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102228908 (col19a1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102228908 (col19a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102228908
NCBI-ProteinID:
XP_023183798
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All DBs
Position
22:complement(11370048..11497121)
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AA seq
1072 aa
AA seq
DB search
MNCYLIRGVAFVWIVNFVPCAFGMVVSEQTGGVCPSLSVEDYRFSDVLDRPLQITGFDLT
EKFLLRKGTVTEDLPSFRLGSSPLIKPTKSIFPDGLSNEYSLVTIFRVRRTTKKDRWYLW
QIFDQSGSSQVSVVVDGDKKAVEFSSEGLLKNSFRYTFKSRDLHALFDRQWHKLGISVHS
DTVSIYVDCTLAEKKMTDERDSIDLNGRTLISTRVEDGRPVDIELRQILIYCDPYMAEME
NCCELLEPKCGVNKTFIGTSPPLVTAQSPLMPSQPTSRSIDTCHCPGEKEDAGIPGMFGL
LKQNREKGDKGELGSEGQKAIDRERGPRGDKGEKGSAGEPGQPGKEGKRGRRGKPGEPGP
RGPPGPSEAVEGASVKREKGECCVPREKGERGDPGQPGAEGTGGAKGQKGDVGPPGPPGS
VMTAHGLRQLSGTVSKRDERAQKGEKGDEGGKGAQGLPGLKGSMGPPGLKGDQGLEGKQG
LPGSIGLPGLPGDSGLPGEPGVPGRDGLKGEKGDSGGVIGPHGPPGPKGEPGEPGGAYMS
DGLSLSRGSRGPKGERGVPGVPGDHGEKGEPGESIIGPAGPPGKPGAEGLRGPPGFSGPP
GTPGREGSPGRPGPPGPAGPPGEPTALPIVGDMGALLKNACSLCQTRVPGLPGQKGEKGS
SGVQGVEGLVGEKGDPGVRGPMGNPGKEGPKGVKGERGFPGPSGDKGDEGPAGAPGLPGV
TGRTGVPGLVGRPGLMGPQGSKGEKGNDGAPGRQGLPGPPGAPYVEGNGMSSLYKLQSGG
AILGPPGAPGAPGPKGDEGPVGEPGPMGLPGLEGLPGAKGDIGLPGPSGTSGPPGKPGTR
GEPGIPGEPGERGPIGETGFPGPEGPQGVPGRPGKDGTPGYKGSTGTPGDRGSKGERGDP
GIPGERGVQGERGRMGDLGMVGPMGPPGEKGDPGPPGQLGSVKLLDDPSFTEELKIFIQS
EVMRIFEEKVSGTATQQKTPAGILASPFQGPPGPPGKDGSSGPPGEPGPPGPQGYRGQKG
ERGQLGLGLPGDPGPTGPPGPPGIPSQGPPGSPGPRGPPGTCDPNDCFLPTL
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgaattgctacttgataagaggggttgctttcgtctggattgtgaactttgttccctgt
gcttttggaatggttgtgagcgaacaaacaggtggtgtatgtccctctttgagtgttgag
gattacagattttctgatgttttggaccgtcctttacagattacaggatttgatctcaca
gaaaaatttcttctccgaaagggaacagttacagaagacctgccatcatttcgactggga
agcagccctcttataaaaccaacgaaatcgatatttccagacggactttcaaatgagtat
tccctggtgaccatcttccgtgtgagacgaactacaaaaaaagaccgctggtacctttgg
caaatatttgaccaatcaggaagcagtcaggtgtctgtggtggttgatggtgataagaaa
gcagtggagttttcttccgagggtctgctgaaaaactctttccgctacacgtttaagagt
cgtgacctgcatgccctctttgatcgccaatggcacaagctcggcatttctgttcacagc
gacacagtatccatttatgtcgattgcacgctggctgaaaagaaaatgactgatgagagg
gacagtatcgatctcaacgggcgcactctcatcagtacacgagtggaagatggaaggcct
gtggatattgagttgaggcaaattctgatctactgtgacccttacatggctgaaatggaa
aactgctgtgagctgcttgagccaaagtgtggagtcaacaagacatttattgggacctca
cctcctctggttacagcccagagtcccctgatgccgtctcagcctacctcacgatcaatt
gacacatgtcactgtccaggagagaaggaagatgctggtattccaggcatgtttgggctg
ttaaaacaaaacagggaaaaaggagacaagggggaacttggatcagaaggtcaaaaggca
atcgatcgagagaggggccctcgaggagataaaggagaaaagggatcagctggagagccg
ggtcagccaggcaaagagggcaagaggggacggagaggaaagccgggggagcctggacca
agaggcccacctggtccttcagaagccgtggagggagcaagtgtcaagagggagaagggg
gagtgttgcgtccctagggaaaagggagagagaggagatcccggtcagccaggtgccgag
gggactggcggtgcgaaaggacaaaaaggtgatgttggtccccctggtcctcctggttct
gtgatgacagctcatgggttaagacagctctctggaactgtaagcaaacgtgatgaaaga
gcccagaagggtgagaagggagatgagggcgggaaaggagctcaaggactgccgggccta
aagggaagcatgggacctccgggactgaagggagatcaaggattggagggaaaacaaggt
ctacctggatccattgggctccctggactcccaggcgattccggcttaccaggggagccg
ggggtgcctgggagagatggcctgaaaggagaaaagggagactctggtggagtgattggg
ccacatgggcctcctggtcctaagggggagcctggagaacctggtggtgcgtatatgagt
gatgggttgtctctgagcagagggtctcgtgggccgaagggtgaaagaggtgtgcctgga
gtgcctggagaccatggagaaaagggagaacctggagagagtatcattggccccgcggga
cccccagggaagccaggagctgagggtctccgtggaccaccaggtttttccggccctcct
ggaactccaggaagagagggctcccctggtagacctggtccaccaggccctgctggacct
ccaggtgaaccaactgccctgcctatcgttggagacatgggtgcattacttaagaacgcc
tgcagtctttgccagacaagagttcctgggctgcctgggcagaagggagagaagggttcc
tctggagtgcaaggagtggaaggcttggtgggagaaaagggggatccaggtgtaagaggt
ccgatgggtaatccaggaaaagaaggcccaaagggtgtaaagggagagagaggcttccca
ggcccctctggagacaagggtgatgagggccctgcaggagctccaggacttccaggcgta
acaggtcgaacaggagtccccggacttgtaggtagacctggtcttatgggcccacaagga
tcaaagggagaaaagggaaacgacggagctccaggcagacaaggacttccaggacctcca
ggtgcgccgtatgtggagggaaacgggatgagcagcctgtacaagctgcagagtggtgga
gctattttaggacctcctggagcgcccggtgctccgggcccaaagggagatgaaggacct
gtcggggaaccaggacccatgggcttacccgggcttgaagggcttcccggtgccaagggt
gatattggcctgcctggcccttctgggacatcaggtcctccagggaaacccggaacacgt
ggagagccagggatcccaggagagccgggtgagagggggcccatcggagagactggattc
cctggacctgagggacctcaaggtgttcctgggaggcctggaaaagatggaactcctgga
tacaagggctccacaggtacaccaggtgacagagggtccaaaggtgaacgtggtgatcca
ggcattcccggagaaagaggcgttcaaggtgaaaggggtcgcatgggtgaccttggcatg
gttggaccgatggggccgccgggtgaaaaaggagatcctggcccccctggacagctgggg
agcgtaaaactcctggatgatcccagctttacagaagaactcaaaatctttatccaaagt
gaagtaatgaggatttttgaagagaaagtgtctggcaccgccacgcaacaaaagacacct
gccggcatcttagcttcacctttccaaggtcctccaggacccccgggcaaggatggatcc
tcaggtccaccaggagagcctgggccacctggacctcaaggataccggggtcagaaagga
gaacgaggacagcttggtctggggttaccaggagatccaggaccgactgggccaccaggg
ccacctgggatcccttcacaaggcccccctggctctcctgggcctcgtggacccccaggg
acttgtgacccgaatgactgctttcttcctaccttgtaa
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