Xiphophorus maculatus (southern platyfish): 102235698
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Entry
102235698 CDS
T02923
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102235698 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
102235698 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102235698 (thoc1)
03041 Spliceosome [BR:
xma03041
]
102235698 (thoc1)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
102235698 (thoc1)
Spliceosome [BR:
xma03041
]
Complex C
Other components
EJC/TREX
102235698 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102235698 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
102235698
NCBI-ProteinID:
XP_014330327
Ensembl:
ENSXMAG00000002353
UniProt:
M3ZJH4
LinkDB
All DBs
Position
6:18377729..18384430
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AA seq
654 aa
AA seq
DB search
MSPPAFNFVDVKEKFTAAARQALSGKTCKHLITVFNQISGNEAEKKTTLDQALRGVLGDQ
IIEQKTSCDDYLSLIYLSIDAVTEGICSATIPFVLLGDVLDCLPLDLCDKIFSFVEKNVS
TWKSSSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKQTDEKEDTMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWTL
QDYFRNPLQCYDKFSWMTFLKFSDETLAVFKSFKLDDMQASKRKMEDLRASAGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQSAWIEETTKLV
YQLLSETPPEGEKFATMVEHILSTEENWNSWKNEGCPSFVKERTSDDKPKRPTRKRQAPE
DFLGKGPERKIFMGNDELTRLWNLNQDNMEACKSESREFMPSLDEFFAEAIEQADPVNMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKTVTNHQMDDIAAKLGSQWKTLASHLEMKAAE
MREIETDSEDVDVQAKLLLVAWQEREGSQATVENLATALSSAGFSQLAERLSEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccccccgcattcaattttgtcgatgtaaaggagaaatttacggctgctgccaga
caggcactctcgggtaaaacctgcaaacatctaatcactgtgtttaaccagatctccgga
aatgaggcagaaaagaagaccacacttgaccaggccctccggggtgttctcggtgatcaa
attattgagcagaagacgagctgtgacgactatctgtctctcatctacctgagtattgat
gcggttactgagggaatctgctctgccacaatcccattcgtcctgctgggagatgtattg
gactgccttcccctggacctgtgtgacaaaatattctcctttgttgagaaaaatgtctcc
acctggaaatcgagctcattctacaccgcaggaaagaactatctgctgagaatgtgcaac
gatcttctaaggaggctgtccaaatcccagaatactgtattctgtgggcgaatccagctt
ttcctggcacgactcttccctctatctgagaaatctggtctgaatctacagagtcaattt
aatctggacaacataacagtgttcaacaagaatgagcaggagagcactcttggccagaag
cagacagatgaaaaggaagacaccatggaggtggaggaaggtgaaatgggggaggatgac
gcacctgcgccctgttctatcccaattgattacaacctatacagaaagttctggacgttg
caggactacttcagaaatccgctgcagtgctacgacaaattctcatggatgacattcctt
aagttttcagacgagaccctcgcagtattcaagagcttcaagctggatgacatgcaggcc
tctaaaagaaagatggaggacctcagagcctctgctggcgaacatgtttattttgccaaa
ttcctcacaagtgagaagctgatggacttgcagctcagcgacagcaacttcagaaggcat
atactgctgcaatacctgatcctcttccagtacctgaagggacaggttaaattcaaaagc
tccagctgtgttctgaatgacgaccagagtgcctggattgaggagacgacaaagctagtt
tatcagctgctgagcgaaacgcctcctgaaggagaaaaattcgccaccatggttgagcac
attctcagcacggaggaaaactggaactcctggaagaacgagggctgtccgagctttgtg
aaagaaagaacatctgatgacaaacctaaaaggcccaccaggaaaagacaagctccagag
gacttccttggaaaagggccagagcgcaagattttcatgggcaatgatgaattgactcga
ctgtggaacttgaaccaggacaacatggaggcctgcaagtctgaaagcagagagtttatg
ccatcactggacgagttctttgcagaagccattgagcaggccgatccagtcaacatggtg
gaggaggaatataaggttgtgcgtaacccaaactacggatggcgggctttgaggctcctg
tccaggaggagtccacacttctttcagccaacaaaccagaagttcaaaagcctggcagac
tacctagacagcatggtcagcaaactggccaaagagctgccgaaggatatcccttcagaa
gaaatcaagacaggagaggaggatgatgacgataatggagacaatcttcttaaagacagc
aatgacagtccgagcatccagagtaaaactgtaacaaaccatcagatggacgacattgca
gccaaactggggtcccagtggaagacgctagcgtctcatctggagatgaaggcagcagag
atgcgggagatcgagacggacagcgaagatgtagatgtacaggccaagctgctgctggtg
gcctggcaggagcgagagggatcccaagcaacagtggagaacctggcaacggctctcagc
tcggcagggttctcccagcttgcagaacgcctcagtgaggcttga
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